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View Structure Prediction Details

Protein: gi|221315808
Organism: Bacillus subtilis subsp. subtilis str. NCIB 3610
Length: 189 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221315808.

Description E-value Query
Range
Subject
Range
gi|89084655, gi|... - gi|89100631|ref|ZP_01173489.1| ribosomal subunit interface protein [Bacillus sp. NRRL B-14911], gi|8...
214.0 [0..1] [187..1]

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Predicted Domain #1
Region A:
Residues: [1-189]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYNIRGENI EVTPALKDHV ERKIGKLERY FDHSVDADVN VNLKFYNDKE SKVEVTIPMT  60
   61 DLALRSEVHN EDMYNAIDLA TNKLERQIRK HKTKVNRKFR EQGSPKYLLA NGLGSDTDIA 120
  121 VQDDIEEEES LDIVRQKRFN LKPMDSEEAI LQMNMLGHNF FVFTNAETNL TNVVYRRNDG 180
  181 KYGLIEPTE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.221849
Match: 1n3gA
Description: Ribosome binding protein Y (YfiA homologue)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.47304811799096 bayes_pls_golite062009
protein binding 0.411183424287687 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle