YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213614465
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-2068
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213614465.

Description	E-value	Query Range	Subject Range
TATB_SALTY - Sec-independent protein translocase protein TatB OS=Salmonella typhimurium GN=tatB PE=3 SV=2 TATB_SALPA - Sec-independent protein translocase protein TatB OS=Salmonella paratyphi A (strain ATCC 9150 / SARB4... lcl\|NC_016856.1_... - [gene=tatB] [protein=sec-independent translocase] [protein_id=YP_005240239.1] [location=4194453..419... TATB_SALCH - Sec-independent protein translocase protein TatB OS=Salmonella choleraesuis (strain SC-B67) GN=tatB ... gi\|197265301, gi... - gi\|197265301\|ref\|ZP_03165375.1\| Sec-independent protein translocase protein TatB [Salmonella enteric... gi\|197211185, gi... - gi\|197247482\|ref\|YP_002148900.1\| Sec-independent protein translocase protein TatB [Salmonella enteri... gi\|194448272, gi... - gi\|194448272\|ref\|YP_002047984.1\| sec-independent translocase [Salmonella enterica subsp. enterica se... gi\|194401136, gi... - gi\|194442473\|ref\|YP_002043203.1\| Sec-independent protein translocase protein TatB [Salmonella enteri... gi\|205354467, gi... - gi\|205354467\|ref\|YP_002228268.1\| sec-independent translocase [Salmonella enterica subsp. enterica se... gi\|200388897, gi... - gi\|200388897\|ref\|ZP_03215509.1\| Sec-independent protein translocase protein TatB [Salmonella enteric... TATB_SALCH - Sec-independent protein translocase protein TatB OS=Salmonella choleraesuis GN=tatB PE=3 SV=1 TATB_SALTY - Sec-independent protein translocase protein tatB OS=Salmonella typhimurium GN=tatB PE=3 SV=2 gi\|198243843, gi... - gi\|198243843\|ref\|YP_002217901.1\| Sec-independent protein translocase protein TatB [Salmonella enteri... gi\|197364758, gi... - gi\|197364758\|ref\|YP_002144395.1\| sec-independent translocase [Salmonella enterica subsp. enterica se... TATB_SALTY - Sec-independent protein translocase protein TatB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ... gi\|205328128, gi... - gi\|205328128\|gb\|EDZ14892.1\| Sec-independent protein translocase protein TatB [Salmonella enterica su... gi\|167553390, gi... - gi\|205322159\|gb\|EDZ09998.1\| Sec-independent protein translocase protein TatB [Salmonella enterica su... gi\|161617097, gi... - gi\|161617097\|ref\|YP_001591062.1\| sec-independent translocase [Salmonella enterica subsp. enterica se... gi\|168822654, gi... - gi\|205340937\|gb\|EDZ27701.1\| Sec-independent protein translocase protein TatB [Salmonella enterica su... gi\|168467609, gi... - gi\|195629955\|gb\|EDX48615.1\| Sec-independent protein translocase protein TatB [Salmonella enterica su... gi\|205348256, gi... - gi\|205348256\|gb\|EDZ34887.1\| Sec-independent protein translocase protein TatB [Salmonella enterica su... gi\|205336503, gi... - gi\|205336503\|gb\|EDZ23267.1\| Sec-independent protein translocase protein TatB [Salmonella enterica su... TATB_SALCH - Sec-independent protein translocase protein tatB homolog OS=Salmonella choleraesuis GN=tatB PE=3 SV=... gi\|238912978 - gi\|238912978\|ref\|ZP_04656815.1\| sec-independent translocase [Salmonella enterica subsp. enterica ser... TATB_SALPA - Sec-independent protein translocase protein TatB OS=Salmonella paratyphi A GN=tatB PE=3 SV=1 gi\|224585789, gi... - gi\|224585789\|ref\|YP_002639588.1\| sec-independent translocase [Salmonella enterica subsp. enterica se... gi\|206710977, gi... - gi\|207859174\|ref\|YP_002245825.1\| sec-independent translocase [Salmonella enterica subsp. enterica se...	1.0E-27	[1..182]	[1..182]
gi\|2576331 - gi\|2576331\|emb\|CAA05158.1\| SpsA protein [Streptococcus pneumoniae]	4.0E-26	[40..182]	[164..313]
gi\|170135587, gi... - gi\|170699500\|ref\|ZP_02890542.1\| twin-arginine translocation protein, TatB subunit [Burkholderia ambi... TATB_BURCM - Sec-independent protein translocase protein TatB OS=Burkholderia ambifaria (strain ATCC BAA-244 / AM...	1.0E-25	[1..182]	[1..172]
gi\|124896048, gi... - gi\|84360597\|ref\|ZP_00985295.1\| COG1826: Sec-independent protein secretion pathway components [Burkho...	1.0E-25	[1..182]	[1..177]
TATB_BURCH - Sec-independent protein translocase protein TatB OS=Burkholderia cenocepacia (strain HI2424) GN=tatB... TATB_BURCA - Sec-independent protein translocase protein TatB OS=Burkholderia cenocepacia (strain AU 1054) GN=tat... gi\|124871292, gi... - gi\|254246516\|ref\|ZP_04939837.1\| Twin-arginine translocation protein TatB [Burkholderia cenocepacia P... gi\|169815013, gi... - gi\|170731771\|ref\|YP_001763718.1\| sec-independent translocase [Burkholderia cenocepacia MC0-3], gi\|16...	2.0E-25	[1..182]	[1..175]
TATB_BURXL - Sec-independent protein translocase protein TatB OS=Burkholderia xenovorans (strain LB400) GN=tatB P...	5.0E-25	[1..182]	[1..171]
TATB_BURL3 - Sec-independent protein translocase protein TatB OS=Burkholderia lata (strain ATCC 17760 / LMG 22485... TATB_BURS3 - Sec-independent protein translocase protein TatB OS=Burkholderia sp. (strain 383) GN=tatB PE=3 SV=1	7.0E-25	[1..182]	[1..171]
gi\|67533054, gi\|... - gi\|67545725\|ref\|ZP_00423645.1\| Twin-arginine translocation protein TatB [Burkholderia vietnamiensis ...	1.0E-24	[1..182]	[1..173]
gi\|46143203 - gi\|46143203\|ref\|ZP_00135686.2\| COG1826: Sec-independent protein secretion pathway components [Actino...	2.0E-24	[1..123]	[1..123]
TATB_HAEDU - Sec-independent protein translocase protein tatB homolog OS=Haemophilus ducreyi GN=tatB PE=3 SV=1 TATB_HAEDU - Sec-independent protein translocase protein TatB OS=Haemophilus ducreyi (strain 35000HP / ATCC 70072...	4.0E-23	[1..154]	[1..153]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDIGFSELL LVFVIGLIVL GPQRLPVAVK TVAGWIRALR SLATTVQNEL TQELKLQEFQ  60
   61 DSLKKVEKAS LENLTPELKA SMDELRQAAE SMKRTYSAND PEQASDEAHT IHNPVVKGNE 120
  121 TQHEGVTPAA AETQASAPEQ KPEPVKANVP ESTETASVAA IDAEKKSAAP VVESSPSSSD 180
  181 KP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.09
Match:	1q1qA
Description:	Crystal structure of human pregnenolone sulfotransferase (SULT2B1a) in the presence of PAP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits