YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194459201, gi...
Organism:	Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194459201, gi....

Description	E-value	Query Range	Subject Range
CYAY_DICCH - Protein CyaY OS=Dickeya chrysanthemi GN=cyaY PE=3 SV=1	3.0E-40	[1..105]	[1..105]
CYAY_ECOL6 - Protein CyaY OS=Escherichia coli O6 GN=cyaY PE=3 SV=1 gi\|227834449, gi... - gi\|227888610\|ref\|ZP_04006415.1\| frataxin family protein [Escherichia coli 83972], gi\|227834449\|gb\|EE... CYAY_ECOL6 - Protein CyaY OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cyaY PE=3 SV=1	8.0E-40	[1..106]	[1..106]
CYAY_ECOHS - Protein CyaY OS=Escherichia coli O9:H4 (strain HS) GN=cyaY PE=3 SV=1	8.0E-40	[1..106]	[1..106]
CYAY_SALTY - Protein cyaY OS=Salmonella typhimurium GN=cyaY PE=3 SV=1 CYAY_SALTY - Protein CyaY OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=cyaY PE=3 SV=1 CYAY_SALTY - Protein CyaY OS=Salmonella typhimurium GN=cyaY PE=3 SV=1 gi\|200386498, gi... - gi\|200386498\|ref\|ZP_03213110.1\| iron donor protein CyaY [Salmonella enterica subsp. enterica serovar... gi\|205328147, gi... - gi\|205328147\|gb\|EDZ14911.1\| iron donor protein CyaY [Salmonella enterica subsp. enterica serovar 4,[...	9.0E-40	[1..106]	[1..106]
gi\|77978546, gi\|... - gi\|77978546\|ref\|ZP_00833974.1\| COG1965: Protein implicated in iron transport, frataxin homolog [Yers...	2.0E-39	[1..105]	[1..105]
CYAY_SALPA - Protein CyaY OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=cyaY PE=3 SV=1 CYAY_SALPK - Protein CyaY OS=Salmonella paratyphi A (strain AKU_12601) GN=cyaY PE=3 SV=1 CYAY_SALPA - Protein CyaY OS=Salmonella paratyphi A GN=cyaY PE=3 SV=1	4.0E-39	[1..106]	[1..106]
gi\|45437819, gi\|... - gi\|45442952\|ref\|NP_994491.1\| frataxin-like protein [Yersinia pestis biovar Microtus str. 91001], gi\|... gi\|22124298, gi\|... - gi\|22124298\|ref\|NP_667721.1\| frataxin-like protein [Yersinia pestis KIM], gi\|21957070\|gb\|AAM83972.1\|...	4.0E-39	[1..105]	[3..107]
CYAY_SALCH - Protein CyaY OS=Salmonella choleraesuis GN=cyaY PE=3 SV=1 CYAY_SALCH - Protein CyaY OS=Salmonella choleraesuis (strain SC-B67) GN=cyaY PE=3 SV=1 CYAY_SALCH - Protein cyaY OS=Salmonella choleraesuis GN=cyaY PE=3 SV=1 CYAY_SALPC - Protein CyaY OS=Salmonella paratyphi C (strain RKS4594) GN=cyaY PE=3 SV=1	5.0E-39	[1..106]	[1..106]
gi\|167468812 - gi\|167468812\|ref\|ZP_02333516.1\| protein CyaY [Yersinia pestis FV-1] gi\|167054795, gi... - gi\|167426276\|ref\|ZP_02318029.1\| iron donor protein CyaY [Yersinia pestis biovar Mediaevalis str. K19... gi\|15981762, gi\|... - gi\|218930850\|ref\|YP_002348725.1\| frataxin-like protein [Yersinia pestis CO92], gi\|16123982\|ref\|NP_40... gi\|270488808\|ref... - iron donor protein CyaY [Yersinia pestis KIM D27] CYAY_YERPG - Protein CyaY OS=Yersinia pestis bv. Antiqua (strain Angola) GN=cyaY PE=3 SV=1 gi\|149289403, gi... - gi\|153997097\|ref\|ZP_02022230.1\| frataxin-like protein [Yersinia pestis CA88-4125], gi\|149289403\|gb\|E... CYAY_YERPP - Protein CyaY OS=Yersinia pestis (strain Pestoides F) GN=cyaY PE=3 SV=1 gi\|165926358, gi... - gi\|165926358\|ref\|ZP_02222190.1\| iron donor protein CyaY [Yersinia pestis biovar Orientalis str. F199... gi\|166213621, gi... - gi\|166213621\|ref\|ZP_02239656.1\| iron donor protein CyaY [Yersinia pestis biovar Antiqua str. B420030... gi\|166011637, gi... - gi\|166011637\|ref\|ZP_02232535.1\| iron donor protein CyaY [Yersinia pestis biovar Antiqua str. E197900... gi\|167421003, gi... - gi\|167421003\|ref\|ZP_02312756.1\| iron donor protein CyaY [Yersinia pestis biovar Orientalis str. MG05... gi\|229837177, gi... - gi\|229837177\|ref\|ZP_04457342.1\| iron-binding frataxin-like protein [Yersinia pestis Pestoides A], gi... gi\|167401816, gi... - gi\|167401816\|ref\|ZP_02307304.1\| iron donor protein CyaY [Yersinia pestis biovar Antiqua str. UG05-04... gi\|229839537, gi... - gi\|229839537\|ref\|ZP_04459696.1\| iron-binding frataxin-like protein [Yersinia pestis biovar Orientali... gi\|229686880, gi... - gi\|229900100\|ref\|ZP_04515237.1\| iron-binding frataxin-like protein [Yersinia pestis biovar Orientali... gi\|294505510\|ref... - frataxin-like protein [Yersinia pestis Z176003] CYAY_YERPE - Protein CyaY OS=Yersinia pestis GN=cyaY PE=3 SV=1 gi\|89104218, gi\|... - gi\|89104218\|ref\|ZP_01176768.1\| COG1965: Protein implicated in iron transport, frataxin homolog [Yers... CYAY_YERPA - Protein CyaY OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=cyaY PE=3 SV=1 CYAY_YERPN - Protein CyaY OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=cyaY PE=3 SV=1	6.0E-39	[1..105]	[1..105]
gi\|238798587, gi... - gi\|77959873\|ref\|ZP_00823807.1\| COG1965: Protein implicated in iron transport, frataxin homolog [Yers...	1.0E-38	[1..105]	[1..105]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDSEFHRLA DALWLTIEER LDNWDGDSDI DCEINGGVLT LSFENGSKII INRQEPLHQV  60
   61 WLATKQGGYH FDLKGDEWVC DRSGETFWDL LEQAATQQAG EKVSFR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.09691
Match:	1soyA
Description:	Solution structure of the bacterial frataxin orthologue, CyaY
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
iron chaperone activity	3.17227948432879	bayes_pls_golite062009
ferrous iron binding	2.87116348009643	bayes_pls_golite062009
iron ion binding	1.73649603719014	bayes_pls_golite062009
2 iron, 2 sulfur cluster binding	1.65779154545819	bayes_pls_golite062009
binding	1.3933630277144	bayes_pls_golite062009
iron-sulfur cluster binding	1.29853952140883	bayes_pls_golite062009
metal cluster binding	1.29853952140883	bayes_pls_golite062009
protein binding	0.663327363466366	bayes_pls_golite062009
ferric iron binding	0.646221482297098	bayes_pls_golite062009
cation binding	0.454189472150568	bayes_pls_golite062009
metal ion binding	0.454189472150568	bayes_pls_golite062009
ion binding	0.447774858608436	bayes_pls_golite062009
metallochaperone activity	0.338980780497959	bayes_pls_golite062009
catalytic activity	0.276917867171685	bayes_pls_golite062009
transition metal ion binding	0.196973490836877	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: