YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218352417, gi...
Organism:	Escherichia coli 55989
Length:	379 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218352417, gi....

Description	E-value	Query Range	Subject Range
gi\|24113446, gi\|... - gi\|24113446\|ref\|NP_707956.1\| putative polysaccharide export protein [Shigella flexneri 2a str. 301],... gi\|30041764, gi\|... - gi\|30063511\|ref\|NP_837682.1\| putative polysaccharide export protein [Shigella flexneri 2a str. 2457T...	413.0	[0..1]	[379..1]
gi\|227835466, gi... - gi\|227887116\|ref\|ZP_04004921.1\| polysaccharide exporter [Escherichia coli 83972], gi\|227835466\|gb\|EE... gi\|110343864, gi... - gi\|110642272\|ref\|YP_670002.1\| putative polysaccharide export protein wza precursor [Escherichia coli...	412.0	[0..1]	[379..1]
gi\|82543438, gi\|... - gi\|82543438\|ref\|YP_407385.1\| putative polysaccharide export protein [Shigella boydii Sb227], gi\|8124...	410.0	[0..1]	[379..1]
gi\|160864077, gi... - gi\|161502730\|ref\|YP_001569842.1\| hypothetical protein SARI_00780 [Salmonella enterica subsp. arizona... lcl\|NC_016856.1_... - [gene=wza] [protein=putative outer membrane polysaccharide export protein] [protein_id=YP_005238154.... WZA_SALTY - Putative polysaccharide export protein wza OS=Salmonella typhimurium GN=wza PE=3 SV=1 gi\|56127238, gi\|... - gi\|56412981\|ref\|YP_150056.1\| putative polysaccharide export protein [Salmonella enterica subsp. ente... gi\|62128322, gi\|... - gi\|62180689\|ref\|YP_217106.1\| putative polysaccharide export protein, outer membrane [Salmonella ente... WZA_SALTY - Putative polysaccharide export protein wza OS=Salmonella typhimurium GN=wza PE=3 SV=1 WZA_SALTY - Putative polysaccharide export protein wza OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7...	409.0	[0..1]	[379..1]
WZA_SALTI - Putative polysaccharide export protein wza OS=Salmonella typhi GN=wza PE=3 SV=1 gi\|29136882, gi\|... - gi\|29141256\|ref\|NP_804598.1\| putative polysaccharide export protein [Salmonella enterica subsp. ente... WZA_SALTI - Putative polysaccharide export protein wza OS=Salmonella typhi GN=wza PE=3 SV=1 gi\|16761047 - gi\|16761047\|ref\|NP_456664.1\| putative polysaccharide export protein [Salmonella enterica subsp. ente...	404.0	[0..1]	[379..1]
YC04_KLEPN - Putative capsule polysaccharide export protein OS=Klebsiella pneumoniae PE=3 SV=1	403.0	[0..1]	[379..1]
gi\|10946230\|gb\|A... - putative outer membrane lipoprotein [Salmonella typhimurium] gi\|10946230 - gi\|10946230\|gb\|AAG24804.1\| putative outer membrane lipoprotein [Salmonella typhimurium]	403.0	[0..2]	[379..1]
gi\|110806031, gi... - gi\|110806031\|ref\|YP_689551.1\| putative polysaccharide export protein [Shigella flexneri 5 str. 8401]...	402.0	[0..6]	[379..1]

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Predicted Domain #1

Region A:
Residues: [1-379]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKSKMKLMP LLVSVTLISG CTVLPGSNMS TMGKDVIKQQ DADFDLDKMV NVYPLTPRLI  60
   61 DQLRPRPNVA RPNMTLESEI ANYQYRVGPG DVLNVTVWDH PELTTPAGQY RSSSDTGNWV 120
  121 QPDGTMFYPY IGKVHVVGKT LAEIRSDITG RLATYIADPQ VDVNIAAFRS QKAYISGQVN 180
  181 KSGQQAITNV PLTILDAINA AGGLTDTADW RNVVLTHNGR EERISLQALM QNGDLNQNRL 240
  241 LYPGDILYVP RNDDLKVFVM GEVKKQSTLK MDFSGMTLTE ALGNAEGIDM TTSNASGIFV 300
  301 IRPLKGEGGR NGKIANIYQL DMSDATSLVM ATEFRLQPYD VVYVTTAPVS RWNRLINQLL 360
  361 PTISGVRYMT DTASDIHNW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	98.69897
Match:	2j58A
Description:	No description for 2j58A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits