YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP6_PHOLL
Organism:	Photorhabdus luminescens subsp. laumondii
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP6_PHOLL.

Description	E-value	Query Range	Subject Range
ATP6_YERPB - ATP synthase subunit a OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=atpB PE=3 SV=1 ATP6_YERPY - ATP synthase subunit a OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=atpB PE=3 SV=1 gi\|229839837, gi... - gi\|229839837\|ref\|ZP_04459996.1\| F0 sector of membrane-bound ATP synthase, subunit a [Yersinia pestis... gi\|229896798, gi... - gi\|229896798\|ref\|ZP_04511961.1\| F0 sector of membrane-bound ATP synthase, subunit a [Yersinia pestis... gi\|229691260, gi... - gi\|229841921\|ref\|ZP_04462077.1\| F0 sector of membrane-bound ATP synthase, subunit a [Yersinia pestis... ATP6_YERP3 - ATP synthase subunit a OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=atpB PE=3 S... gi\|149290347, gi... - gi\|150260939\|ref\|ZP_01917667.1\| ATP synthase subunit B protein [Yersinia pestis CA88-4125], gi\|14929... ATP6_YERPP - ATP synthase subunit a OS=Yersinia pestis (strain Pestoides F) GN=atpB PE=3 SV=1 ATP6_YERPS - ATP synthase subunit a OS=Yersinia pseudotuberculosis GN=atpB PE=3 SV=1 ATP6_YERPN - ATP synthase subunit a OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=atpB PE=3 SV=1 ATP6_YERPA - ATP synthase subunit a OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=atpB PE=3 SV=1 gi\|21961157, gi\|... - gi\|22128009\|ref\|NP_671432.1\| F0F1 ATP synthase subunit A [Yersinia pestis KIM], gi\|21961157\|gb\|AAM87... ATP6_YERPE - ATP synthase subunit a OS=Yersinia pestis GN=atpB PE=3 SV=1 ATP6_YERPS - ATP synthase subunit a OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=atpB PE=3 SV=1 gi\|45443757, gi\|... - gi\|45443757\|ref\|NP_995296.1\| F0F1 ATP synthase subunit A [Yersinia pestis biovar Microtus str. 91001... gi\|115349714, gi... - gi\|218931103\|ref\|YP_002348978.1\| F0F1 ATP synthase subunit A [Yersinia pestis CO92], gi\|16124235\|ref...	201.0	[0..1]	[274..1]

Back

Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASGEVSTA RDYIGHHLNN LQLDLRTFEL VDPNSGGSAT FWTLNIDSLF FSVVLGILFL  60
   61 YVFRKVAV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [69-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NATSGVPGKL QTAIELIMGF VDNSVRDMYH GKSKVIAPLA LTVFVWVLLM NVMDLLPIDF  60
   61 LPYIGEHFFG LPALRVVPTA DVSVTLSMAI GVFVLILYYS IKMKGIGGFT KELTLQPFNH 120
  121 PLFIPINLIL EGVSLLSKPV SLGLRLFGNM YAGELIFILI AGLLPWWSQW LLSLPWAIFH 180
  181 ILIITLQAFI FMVLTIVYLS MASEEH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.39794
Match:	1c17M
Description:	F1F0 ATP synthase subunit A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrogen ion transporting ATP synthase activity, rotational mechanism	14.916062574431	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	13.3765277511271	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	11.6266555949852	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	10.5141571800158	bayes_pls_golite062009
cation transmembrane transporter activity	6.7755175807552	bayes_pls_golite062009
ion transmembrane transporter activity	6.66886754588748	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	6.24164033661356	bayes_pls_golite062009
proton-transporting ATPase activity, rotational mechanism	5.34968915140418	bayes_pls_golite062009
transporter activity	4.44683838532142	bayes_pls_golite062009
substrate-specific transporter activity	4.37473908570954	bayes_pls_golite062009
transmembrane transporter activity	4.36056336888635	bayes_pls_golite062009
cation-transporting ATPase activity	3.33662712450334	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	1.11865103919948	bayes_pls_golite062009
primary active transmembrane transporter activity	0.517601509369888	bayes_pls_golite062009
active transmembrane transporter activity	0.511311810386796	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	0.510137962484563	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	0.476924701765357	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	0.473395661531507	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	0.473285892250811	bayes_pls_golite062009
catalytic activity	0.276917867171685	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.242742762516199	bayes_pls_golite062009
pyrophosphatase activity	0.201337507209354	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.191294406773539	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.188721983770471	bayes_pls_golite062009
ATPase activity, coupled	0.110491424400621	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: