YRC Public Data Repository - Protein Structure Prediction

Protein:	HUTP_BACSU
Organism:	Bacillus subtilis subsp. subtilis str. 168
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HUTP_BACSU.

Description	E-value	Query Range	Subject Range
HUTP_BACCZ - Hut operon positive regulatory protein OS=Bacillus cereus (strain ZK / E33L) GN=hutP PE=3 SV=1	228.0	[0..1]	[148..1]
gi\|49186447, gi\|... - gi\|49186447\|ref\|YP_029699.1\| anti-terminator HutP [Bacillus anthracis str. Sterne], gi\|49180374\|gb\|A... gi\|47528997, gi\|... - gi\|47528997\|ref\|YP_020346.1\| anti-terminator HutP [Bacillus anthracis str. 'Ames Ancestor'], gi\|4750... HUTP_BACC1 - Hut operon positive regulatory protein OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=hutP PE=3... gi\|30258234, gi\|... - gi\|30263599\|ref\|NP_845976.1\| anti-terminator HutP [Bacillus anthracis str. Ames], gi\|30258234\|gb\|AAP... HUTP_BACC3 - Hut operon positive regulatory protein OS=Bacillus cereus (strain 03BB102) GN=hutP PE=3 SV=1 HUTP_BACAC - Hut operon positive regulatory protein OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=hutP PE... gi\|228850251, gi... - gi\|228909474\|ref\|ZP_04073299.1\| Hut operon positive regulatory protein [Bacillus thuringiensis IBL 2... HUTP_BACHK - Hut operon positive regulatory protein OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=... gi\|228843477, gi... - gi\|228916279\|ref\|ZP_04079849.1\| Hut operon positive regulatory protein [Bacillus thuringiensis serov... gi\|228922359, gi... - gi\|228922359\|ref\|ZP_04085666.1\| Hut operon positive regulatory protein [Bacillus thuringiensis serov... HUTP_BACCQ - Hut operon positive regulatory protein OS=Bacillus cereus (strain Q1) GN=hutP PE=3 SV=1 gi\|228831019, gi... - gi\|228928700\|ref\|ZP_04091736.1\| Hut operon positive regulatory protein [Bacillus thuringiensis serov... gi\|228824826, gi... - gi\|228934926\|ref\|ZP_04097757.1\| Hut operon positive regulatory protein [Bacillus thuringiensis serov... gi\|228818979, gi... - gi\|228940735\|ref\|ZP_04103298.1\| Hut operon positive regulatory protein [Bacillus thuringiensis serov... gi\|65320925, gi\|... - gi\|65320925\|ref\|ZP_00393884.1\| hypothetical protein Bant_01004366 [Bacillus anthracis str. A2012], r... gi\|228812512, gi... - gi\|228947265\|ref\|ZP_04109559.1\| Hut operon positive regulatory protein [Bacillus thuringiensis serov... gi\|47555415, gi\|... - gi\|47567937\|ref\|ZP_00238644.1\| Hut operon positive regulatory protein [Bacillus cereus G9241], gi\|47... gi\|228805746, gi... - gi\|228953926\|ref\|ZP_04115964.1\| Hut operon positive regulatory protein [Bacillus thuringiensis serov... gi\|228786116, gi... - gi\|228973655\|ref\|ZP_04134237.1\| Hut operon positive regulatory protein [Bacillus thuringiensis serov... gi\|228980211, gi... - gi\|228980211\|ref\|ZP_04140525.1\| Hut operon positive regulatory protein [Bacillus thuringiensis Bt407... gi\|228773076, gi... - gi\|228986745\|ref\|ZP_04146875.1\| Hut operon positive regulatory protein [Bacillus thuringiensis serov... gi\|228724075, gi... - gi\|229047333\|ref\|ZP_04192932.1\| Hut operon positive regulatory protein [Bacillus cereus AH676], gi\|2... gi\|229071159, gi... - gi\|229071159\|ref\|ZP_04204385.1\| Hut operon positive regulatory protein [Bacillus cereus F65185], gi\|... gi\|229080867, gi... - gi\|229080867\|ref\|ZP_04213384.1\| Hut operon positive regulatory protein [Bacillus cereus Rock4-2], gi... gi\|229092624, gi... - gi\|229092624\|ref\|ZP_04223775.1\| Hut operon positive regulatory protein [Bacillus cereus Rock3-42], g... gi\|229111075, gi... - gi\|229111075\|ref\|ZP_04240634.1\| Hut operon positive regulatory protein [Bacillus cereus Rock1-15], g... gi\|229123167, gi... - gi\|229123167\|ref\|ZP_04252373.1\| Hut operon positive regulatory protein [Bacillus cereus 95/8201], gi... gi\|228654630, gi... - gi\|229128925\|ref\|ZP_04257901.1\| Hut operon positive regulatory protein [Bacillus cereus BDRD-Cer4], ... gi\|228643204, gi... - gi\|229140271\|ref\|ZP_04268828.1\| Hut operon positive regulatory protein [Bacillus cereus BDRD-ST26], ... gi\|228637277, gi... - gi\|229146218\|ref\|ZP_04274593.1\| Hut operon positive regulatory protein [Bacillus cereus BDRD-ST24], ... gi\|228631661, gi... - gi\|229151848\|ref\|ZP_04280047.1\| Hut operon positive regulatory protein [Bacillus cereus m1550], gi\|2... gi\|228626292, gi... - gi\|229157228\|ref\|ZP_04285308.1\| Hut operon positive regulatory protein [Bacillus cereus ATCC 4342], ... gi\|229162483, gi... - gi\|229162483\|ref\|ZP_04290444.1\| Hut operon positive regulatory protein [Bacillus cereus R309803], gi... gi\|228603618, gi... - gi\|229179937\|ref\|ZP_04307283.1\| Hut operon positive regulatory protein [Bacillus cereus 172560W], gi... gi\|228597597, gi... - gi\|229185885\|ref\|ZP_04313058.1\| Hut operon positive regulatory protein [Bacillus cereus BGSC 6E1], g... gi\|229191736, gi... - gi\|229191736\|ref\|ZP_04318713.1\| Hut operon positive regulatory protein [Bacillus cereus ATCC 10876],... HUTP_BACHK - Hut operon positive regulatory protein OS=Bacillus thuringiensis subsp. konkukian GN=hutP PE=3 SV=1 HUTP_BACAN - Hut operon positive regulatory protein OS=Bacillus anthracis GN=hutP PE=3 SV=1 HUTP_BACCR - Hut operon positive regulatory protein OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / N... gi\|196034230, gi... - gi\|196034230\|ref\|ZP_03101640.1\| hut operon transcriptional activator [Bacillus cereus W], gi\|1959933... gi\|190564578, gi... - gi\|190564578\|ref\|ZP_03017499.1\| hut operon transcriptional activator [Bacillus anthracis Tsiankovski... gi\|196024605, gi... - gi\|196044570\|ref\|ZP_03111805.1\| hut operon transcriptional activator [Bacillus cereus 03BB108], gi\|1... gi\|196038448, gi... - gi\|196038448\|ref\|ZP_03105757.1\| hut operon transcriptional activator [Bacillus cereus NVH0597-99], g... gi\|206976152, gi... - gi\|206976152\|ref\|ZP_03237061.1\| hut operon transcriptional activator [Bacillus cereus H3081.97], gi\|... gi\|206736196, gi... - gi\|206969155\|ref\|ZP_03230110.1\| hut operon transcriptional activator [Bacillus cereus AH1134], gi\|20... HUTP_BACC4 - Hut operon positive regulatory protein OS=Bacillus cereus (strain B4264) GN=hutP PE=3 SV=1 HUTP_BACC7 - Hut operon positive regulatory protein OS=Bacillus cereus (strain AH187) GN=hutP PE=3 SV=1 gi\|167636335, gi... - gi\|167636335\|ref\|ZP_02394636.1\| hut operon transcriptional activator [Bacillus anthracis str. A0442]... gi\|164713196, gi... - gi\|165870985\|ref\|ZP_02215636.1\| hut operon transcriptional activator [Bacillus anthracis str. A0488]... gi\|172082112, gi... - gi\|177652438\|ref\|ZP_02934905.1\| hut operon transcriptional activator [Bacillus anthracis str. A0174]... gi\|167641463, gi... - gi\|167641463\|ref\|ZP_02399712.1\| hut operon transcriptional activator [Bacillus anthracis str. A0193]... gi\|228585708, gi... - gi\|229197763\|ref\|ZP_04324482.1\| Hut operon positive regulatory protein [Bacillus cereus m1293], gi\|2... HUTP_BACAA - Hut operon positive regulatory protein OS=Bacillus anthracis (strain A0248) GN=hutP PE=3 SV=1 gi\|254686217 - gi\|254686217\|ref\|ZP_05150076.1\| anti-terminator HutP [Bacillus anthracis str. CNEVA-9066] gi\|254726017 - gi\|254726017\|ref\|ZP_05187799.1\| anti-terminator HutP [Bacillus anthracis str. A1055] gi\|254738690 - gi\|254738690\|ref\|ZP_05196393.1\| anti-terminator HutP [Bacillus anthracis str. Western North America ... HUTP_BACAH - Hut operon positive regulatory protein OS=Bacillus thuringiensis (strain Al Hakam) GN=hutP PE=3 SV=1 gi\|254744752 - gi\|254744752\|ref\|ZP_05202430.1\| anti-terminator HutP [Bacillus anthracis str. Kruger B] gi\|254753008 - gi\|254753008\|ref\|ZP_05205044.1\| anti-terminator HutP [Bacillus anthracis str. Vollum] gi\|254759279 - gi\|254759279\|ref\|ZP_05211305.1\| anti-terminator HutP [Bacillus anthracis str. Australia 94]	228.0	[0..1]	[148..1]
gi\|228857577, gi... - gi\|228902151\|ref\|ZP_04066315.1\| Hut operon positive regulatory protein [Bacillus thuringiensis IBL 4... gi\|75762071, gi\|... - gi\|75762071\|ref\|ZP_00741979.1\| Hut operon positive regulatory protein [Bacillus thuringiensis serova...	223.0	[0..1]	[148..1]
gi\|51247918, gi\|... - gi\|51247918\|pdb\|1VEA\|B Chain B, Crystal Structure Of Hutp, An Rna Binding Antitermination Protein, g...	216.0	[0..1]	[148..1]
gi\|73049, gi\|143... - pir\|\|RGBSHP regulatory protein hutP [similarity] - Bacillus subtilis, gi\|603771\|dbj\|BAA06645.1\| Hut... gi\|16080985, gi\|... - gi\|2636480\|emb\|CAB15970.1\| transcriptional antiterminator [Bacillus subtilis subsp. subtilis str. 16...	216.0	[0..1]	[148..4]
gi\|89149401, gi\|... - gi\|89202539\|ref\|ZP_01181256.1\| hut operon transcriptional activator [Bacillus cereus subsp. cytotoxi...	207.0	[0..12]	[148..1]
HUTP_BACHD - Hut operon positive regulatory protein OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FER... HUTP_BACHD - Hut operon positive regulatory protein OS=Bacillus halodurans GN=hutP PE=3 SV=1	206.0	[0..1]	[148..1]
HUTP_BACCE - Hut operon positive regulatory protein (Fragment) OS=Bacillus cereus GN=hutP PE=3 SV=1	205.0	[0..1]	[134..1]
gi\|56418919, gi\|... - gi\|56418919\|ref\|YP_146237.1\| anti-terminator HutP [Geobacillus kaustophilus HTA426], gi\|56378761\|dbj...	202.0	[0..5]	[148..4]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLHKERRIG RLSVLLLLNE AEESTQVEEL ERDGWKVCLG KVGSMDAHKV VAAIETASKK  60
   61 SGVIQSEGYR ESHALYHATM EALHGVTRGE MLLGSLLRTV GLRFAVLRGN PYESEAEGDW 120
  121 IAVSLYGTIG APIKGLEHET FGVGINHI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.0
Match:	1veaA
Description:	Crystal Structure of HutP, an RNA binding antitermination protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits