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View Structure Prediction Details

Protein: gi|167740537
Organism: Burkholderia pseudomallei 14
Length: 131 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167740537.

Description E-value Query
Range
Subject
Range
RS8_THIDA - 30S ribosomal protein S8 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpsH PE=3 SV=1
192.0 [0..1] [131..1]

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Predicted Domain #1
Region A:
Residues: [1-131]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMSDPIADM LTRIRNAQMV EKVSVSMPSS KVKVAIAQVL KDEGYIDDFA VKADGAKAEL  60
   61 NIALKYYAGR PVIERLERVS KPGLRVYRGR NEIPQVMNGL GVAIVSTPKG VMTDRKARAT 120
  121 GVGGEVICYV A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 48.045757
Match: 1vs5H
Description: No description for 1vs5H was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.91574154879999 bayes_pls_golite062009
structural molecule activity 9.33953790706737 bayes_pls_golite062009
RNA binding 3.60072898867086 bayes_pls_golite062009
nucleic acid binding 1.6893953910876 bayes_pls_golite062009
binding 1.38159031366603 bayes_pls_golite062009
protein binding 0.362605314771104 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle