YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218197523
Organism:	Oryza sativa Indica Group
Length:	316 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218197523.

Description	E-value	Query Range	Subject Range
gi\|92870687 - gi\|92870687\|gb\|ABE79958.1\| YEATS [Medicago truncatula]	261.0	[0..40]	[309..3]
TA14B_ARATH - Transcription initiation factor TFIID subunit 14b OS=Arabidopsis thaliana GN=TAF14B PE=1 SV=1	253.0	[0..38]	[308..3]
gi\|114197706, gi... - gi\|115492437\|ref\|XP_001210846.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	247.0	[0..48]	[306..24]
AF9_EMENI - Protein AF-9 homolog OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M... AF9_EMENI - Protein AF-9 homolog OS=Emericella nidulans GN=yaf9 PE=3 SV=1	237.0	[0..71]	[306..2]
gi\|220698972, gi... - gi\|238485710\|ref\|XP_002374093.1\| histone acetyltransferase subunit (Yaf9), putative [Aspergillus fla... gi\|169771703 - gi\|169771703\|ref\|XP_001820321.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83768180 - gi\|83768180\|dbj\|BAE58319.1\| unnamed protein product [Aspergillus oryzae]	236.0	[0..71]	[306..2]
gi\|48106789 - gi\|48106789\|ref\|XP_396159.1\| PREDICTED: similar to YEATS domain containing 4 [Apis mellifera]	235.0	[0..65]	[314..1]
gi\|109123129 - gi\|109123129\|ref\|XP_001090388.1\| PREDICTED: similar to myeloid/lymphoid or mixed-lineage leukemia (t...	230.0	[0..40]	[316..46]
gi\|91090888 - gi\|91090888\|ref\|XP_973381.1\| PREDICTED: similar to YEATS domain containing protein 4 [Tribolium cast...	230.0	[0..65]	[313..1]
gi\|74003399 - gi\|74003399\|ref\|XP_545223.2\| PREDICTED: similar to YEATS domain containing 2 [Canis familiaris]	229.0	[0..5]	[276..134]
gi\|119196121, gi... - gi\|90307450\|gb\|EAS37081.1\| hypothetical protein CIMG_02435 [Coccidioides immitis RS], gi\|119196121\|r...	229.0	[0..71]	[305..2]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQASSSSSP ATAAAPPPPQ PAADPSPSAV PASEEALDPQ TPAPPPQAQP EAVLTAAQKA  60
   61 LRSKPT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [67-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPPEDSDKKN KKLKDVEISF PIVYGTISFW LGKKASEYNS HKWTVYVRSA TNEDLSVIVK  60
   61 RVVFQLHPSF TNPTRVVEQP PFELSESGWG EFEIAITLYF HSDVCEKRLD LFHQLKL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	41.677781
Match:	PF03366.7
Description:	No description for PF03366.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [184-316]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPEEDTGPQS TKKPVVVETY DEIVFPEPTE AFFQRVQNHP AATVPRLPPG ITLPPPGPME  60
   61 LVPHEKKRGD TKDHPLSQWF SNFSEADELL KLAAARQQVQ AHIAKLRRQL SMIDGMPQQS 120
  121 KAVSVQGQQF GHG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits