YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|162329652
Organism:	Francisella tularensis subsp. tularensis WY96-3418
Length:	71 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|162329652.

Description	E-value	Query Range	Subject Range
gi\|62257737 - gi\|62257737\|gb\|AAX77735.1\| unknown protein [synthetic construct]	3.0E-29	[1..71]	[40..110]
RL31_AROAE - 50S ribosomal protein L31 OS=Aromatoleum aromaticum (strain EbN1) GN=rpmE PE=3 SV=1	1.0E-28	[1..71]	[1..71]
RL31_THIDA - 50S ribosomal protein L31 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpmE PE=3 SV=1	2.0E-28	[1..68]	[1..68]
gi\|115129936, gi... - gi\|115315037\|ref\|YP_763760.1\| ribosomal protein L31 [Francisella tularensis subsp. holarctica OSU18]... gi\|156502744, gi... - gi\|156502744\|ref\|YP_001428809.1\| 50S ribosomal protein L31 [Francisella tularensis subsp. holarctica...	2.0E-27	[1..70]	[14..83]
gi\|89144443\|emb\|... - 50S ribosomal protein L31 [Francisella tularensis subsp. holarctica LVS] gi\|89256612, gi\|... - gi\|89256612\|ref\|YP_513974.1\| 50S ribosomal protein L31 [Francisella tularensis subsp. holarctica], g... gi\|157122587, gi... - gi\|254369628\|ref\|ZP_04985638.1\| 50S ribosomal protein L31 [Francisella tularensis subsp. holarctica ... gi\|134253735, gi... - gi\|254367925\|ref\|ZP_04983945.1\| 50S ribosomal protein L31 [Francisella tularensis subsp. holarctica ...	3.0E-27	[1..70]	[12..81]
gi\|153840404, gi... - gi\|153840404\|ref\|ZP_01993071.1\| ribosomal protein L31 [Vibrio parahaemolyticus AQ3810], gi\|149745932... RL31_VIBPA - 50S ribosomal protein L31 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rpmE PE... RL31_VIBPA - 50S ribosomal protein L31 OS=Vibrio parahaemolyticus GN=rpmE PE=3 SV=1	3.0E-27	[1..69]	[1..69]
gi\|91187416, gi\|... - gi\|91229291\|ref\|ZP_01262908.1\| 50S ribosomal protein L31 [Vibrio alginolyticus 12G01], gi\|91187416\|g... gi\|75854325, gi\|... - gi\|75854325\|ref\|ZP_00762025.1\| COG0254: Ribosomal protein L31 [Vibrio sp. Ex25], gi\|116183924\|ref\|ZP...	3.0E-27	[1..69]	[1..69]
gi\|88913103, gi\|... - gi\|88930633\|ref\|ZP_01136328.1\| Ribosomal protein L31 [Acidothermus cellulolyticus 11B], gi\|88913103\|...	4.0E-27	[1..68]	[42..109]
gi\|85666535 - gi\|85666535\|ref\|ZP_01028759.1\| hypothetical protein Badol_01001380 [Bifidobacterium adolescentis] RL31_BIFAA - 50S ribosomal protein L31 OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 1181... gi\|154486884, gi... - gi\|154486884\|ref\|ZP_02028291.1\| hypothetical protein BIFADO_00717 [Bifidobacterium adolescentis L2-3... gi\|212660686, gi... - gi\|212716433\|ref\|ZP_03324561.1\| hypothetical protein BIFCAT_01357 [Bifidobacterium catenulatum DSM 1...	5.0E-27	[1..70]	[1..70]
gi\|114771531, gi... - gi\|114771531\|ref\|ZP_01448941.1\| 50S ribosomal subunit protein L31 [alpha proteobacterium HTCC2255], ... gi\|114771531 - gi\|114771531\|ref\|ZP_01448941.1\| 50S ribosomal subunit protein L31 [alpha proteobacterium HTCC2255] gi\|221133921 - gi\|221133921\|ref\|ZP_03560226.1\| 50S ribosomal subunit protein L31 [Glaciecola sp. HTCC2999]	5.0E-27	[1..70]	[1..69]

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Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQEIHPKYT EVTVTCSCGN TFVTRSTAGK KEMNIDICSE CHPFYTGKQR IVDTAGRVDK  60
   61 FKKRFGGMKK I

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.0
Match:	1vs6Z
Description:	No description for 1vs6Z was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.93798084434094	bayes_pls_golite062009
structural molecule activity	9.3625249805433	bayes_pls_golite062009
binding	0.865205020833206	bayes_pls_golite062009
protein binding	0.159303137691685	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: