YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213027054
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. 404ty
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213027054.

Description	E-value	Query Range	Subject Range
gi\|16762269 - gi\|16762269\|ref\|NP_457886.1\| DNA-invertase [Salmonella enterica subsp. enterica serovar Typhi str. C... gi\|16504573, gi\|... - gi\|25300483\|pir\|\|AF0929 DNA-invertase [imported] - Salmonella enterica subsp. enterica serovar Typhi... gi\|213650678 - gi\|213650678\|ref\|ZP_03380731.1\| putative DNA-invertase [Salmonella enterica subsp. enterica serovar ...	2.0E-53	[1..188]	[1..188]
gi\|82543327, gi\|... - gi\|82543327\|ref\|YP_407274.1\| inversion of adjacent DNA; at locus of e14 element [Shigella boydii Sb2...	2.0E-53	[1..188]	[1..188]
gi\|209483441 - gi\|209483441\|gb\|ACI47260.1\| InvA [Klebsiella pneumoniae] gi\|156936517, gi... - gi\|156936517\|ref\|YP_001440432.1\| hypothetical protein ESA_pESA2p06563 [Enterobacter sakazakii ATCC B... gi\|34013343, gi\|... - gi\|34500522\|ref\|NP_904293.1\| DNA invertase [Delftia acidovorans], gi\|34013343\|dbj\|BAC82016.1\| DNA in... gi\|46319637, gi\|... - gi\|67543486\|ref\|ZP_00421418.1\| Resolvase, N-terminal:Resolvase helix-turn-helix region [Burkholderia... gi\|51470645, gi\|... - gi\|51492602\|ref\|YP_067899.1\| DNA recombinase [Aeromonas punctata], gi\|51470645\|emb\|CAG15136.1\| DNA r... gi\|217507883, gi... - gi\|217970556\|ref\|YP_002355790.1\| Resolvase domain protein [Thauera sp. MZ1T], gi\|217507883\|gb\|ACK548...	1.0E-51	[1..182]	[1..182]
gi\|15838622, gi\|... - gi\|9107146\|gb\|AAF84830.1\|AE004021_7 DNA invertase [Xylella fastidiosa 9a5c], gi\|15838622\|ref\|NP_2993... gi\|11277976 - pir\|\|F82607 DNA invertase XF2028 [imported] - Xylella fastidiosa (strain 9a5c)	4.0E-51	[1..184]	[1..184]
gi\|66862675, gi\|... - gi\|66968593\|ref\|YP_245470.1\| putative DNA invertase [Pseudomonas aeruginosa], gi\|66862675\|emb\|CAI469...	4.0E-51	[1..182]	[1..182]
gi\|110829362, gi... - gi\|121608377\|ref\|YP_996184.1\| resolvase domain-containing protein [Verminephrobacter eiseniae EF01-2...	7.0E-51	[1..182]	[1..182]
gi\|71839155, gi\|... - gi\|71839155\|ref\|ZP_00678908.1\| Resolvase, N-terminal:Resolvase helix-turn-helix domain [Pelobacter p...	2.0E-50	[1..184]	[1..184]
gi\|71900350, gi\|... - gi\|71900350\|ref\|ZP_00682484.1\| Resolvase, N-terminal:Resolvase helix-turn-helix region [Xylella fast...	2.0E-50	[1..184]	[1..184]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIGYVRVST NDQNTDLQRN ALSCAGCERI FEDKISGTKS DRPGLKKLLR TLSAGDTLVV  60
   61 WKLDRLGRSM RHLVTLIEEL RQRGVNFRSL TDSIDTSTPM GRFFFHVMGA LAEMERELIV 120
  121 ERTRAGLAAA RAKGRVGGRR PKLTSEQWAQ IGRLLEAGES RQRIALIFDV GVSTIYRKFP 180
  181 ANKNNKSP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.69897
Match:	1gdtA
Description:	gamma,delta resolvase (C-terminal domain); gamma,delta resolvase, catalytic domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
site-specific recombinase activity	3.0240363733074	bayes_pls_golite062009
transcription regulator activity	1.76956337706487	bayes_pls_golite062009
DNA binding	1.58100039759954	bayes_pls_golite062009
nucleic acid binding	1.46839493313894	bayes_pls_golite062009
catalytic activity	1.20658247466773	bayes_pls_golite062009
transcription factor activity	1.0707787742149	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: