YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220965854, gi...
Organism:	Caulobacter crescentus NA1000
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220965854, gi....

Description	E-value	Query Range	Subject Range
gi\|27354232, gi\|... - gi\|27381066\|ref\|NP_772595.1\| formyltetrahydrofolate deformylase [Bradyrhizobium japonicum USDA 110],...	313.0	[0..2]	[280..7]
gi\|110594248, gi... - gi\|110594248\|ref\|ZP_01382595.1\| formyltetrahydrofolate deformylase [Acidovorax sp. JS42], gi\|1103364...	311.0	[0..2]	[278..125]
gi\|87200875, gi\|... - gi\|87200875\|ref\|YP_498132.1\| formyltetrahydrofolate deformylase [Novosphingobium aromaticivorans DSM...	310.0	[0..1]	[278..5]
gi\|187479291, gi... - gi\|187479291\|ref\|YP_787316.1\| formyltetrahydrofolate deformylase [Bordetella avium 197N], gi\|1154238...	307.0	[0..2]	[278..7]
gi\|29607500, gi\|... - gi\|29830389\|ref\|NP_825023.1\| formyltetrahydrofolate deformylase [Streptomyces avermitilis MA-4680], ...	307.0	[0..2]	[279..16]
gi\|83360838, gi\|... - gi\|83369484\|ref\|ZP_00914338.1\| Formyltetrahydrofolate deformylase [Rhodobacter sphaeroides ATCC 1702...	306.0	[0..2]	[278..5]
gi\|25286221, gi\|... - pir\|\|AF2879 formyltetrahydrofolate deformylase [imported] - Agrobacterium tumefaciens (strain C58, D... gi\|17740955, gi\|... - gi\|17936346\|ref\|NP_533136.1\| formyltetrahydrofolate deformylase [Agrobacterium tumefaciens str. C58]...	305.0	[0..2]	[278..5]
gi\|32141235, gi\|... - gi\|32141235\|ref\|NP_733636.1\| formyltetrahydrofolate deformylase [Streptomyces coelicolor A3(2)], gi\|...	305.0	[0..2]	[279..20]
gi\|119375107, gi... - gi\|69936296\|ref\|ZP_00631122.1\| Formyltetrahydrofolate deformylase [Paracoccus denitrificans PD1222],...	304.0	[0..3]	[278..6]
gi\|114767063, gi... - gi\|114767063\|ref\|ZP_01445960.1\| formyltetrahydrofolate deformylase protein [Roseovarius sp. HTCC2601...	304.0	[0..3]	[278..6]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILTLSCPDQ RGIVAKVSAF LFERGCNILD AQQFDDQETG QFFMRVVFDA DGADREALRG  60
   61 DFGALADGFK MKWTLRNRAD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.522879
Match:	1u8sA
Description:	Crystal structure of putative glycine cleavage system transcriptional repressor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring aldehyde or ketonic groups	1.82494854621265	bayes_pls_golite062009
catalytic activity	1.01569611874813	bayes_pls_golite062009
transferase activity	0.07375530569672	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [81-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RYRVLLLASK FDHCLADLVY RWRIGELPMD ITGVVSNHPA QTYAHVDLSG LDFHHLPVTK  60
   61 ETKFEQEAEL WKLIQETKTD IVVLARYMQV LSDGLSAKLQ GRCINIHHSF LPGFKGAKPY 120
  121 HQAHARGVKL IGASAHYVTG DLDEGPIIEQ DVERISHRDT PEDLVRKGRD IERRVLARAL 180
  181 RYRLEDRVLL NGRKTVVFTD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.0
Match:	1mejB
Description:	Glycinamide ribonucleotide transformylase, GART
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydroxymethyl-, formyl- and related transferase activity	4.30911230869939	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	3.93829204810029	bayes_pls_golite062009
phosphoribosylglycinamide formyltransferase activity	3.16061609458624	bayes_pls_golite062009
catalytic activity	2.53047786804923	bayes_pls_golite062009
methyltransferase activity	1.49959796419617	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.49630496597474	bayes_pls_golite062009
transferase activity	1.21569993951472	bayes_pls_golite062009
formyltetrahydrofolate deformylase activity	0.85803295611657	bayes_pls_golite062009
methionyl-tRNA formyltransferase activity	0.27296524587077	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: