YRC Public Data Repository - Protein Structure Prediction

Protein:	AHPD_BRUSI
Organism:	Brucella suis ATCC 23445
Length:	175 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AHPD_BRUSI.

Description	E-value	Query Range	Subject Range
AHPD_STRAW - Alkyl hydroperoxide reductase AhpD OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM ... AHPD_STRAW - Alkyl hydroperoxide reductase AhpD OS=Streptomyces avermitilis GN=ahpD PE=3 SV=1	197.0	[0..1]	[171..1]
AHPD_BRUSU - Alkyl hydroperoxide reductase ahpD OS=Brucella suis GN=ahpD PE=3 SV=1 AHPD_BRUC2 - Alkyl hydroperoxide reductase AhpD OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=ahpD PE=3 S... gi\|254703051 - gi\|254703051\|ref\|ZP_05164879.1\| alkylhydroperoxidase [Brucella suis bv. 3 str. 686] AHPD_BRUSU - Alkyl hydroperoxide reductase AhpD OS=Brucella suis biovar 1 (strain 1330) GN=ahpD PE=3 SV=1	197.0	[0..1]	[175..1]
AHPD_BRUAB - Alkyl hydroperoxide reductase AhpD OS=Brucella abortus biovar 1 (strain 9-941) GN=ahpD PE=3 SV=1 AHPD_BRUA2 - Alkyl hydroperoxide reductase AhpD OS=Brucella abortus (strain 2308) GN=ahpD PE=3 SV=1 AHPD_BRUAB - Alkyl hydroperoxide reductase ahpD OS=Brucella abortus GN=ahpD PE=3 SV=1 AHPD_BRUA1 - Alkyl hydroperoxide reductase AhpD OS=Brucella abortus (strain S19) GN=ahpD PE=3 SV=1 gi\|254698730 - gi\|254698730\|ref\|ZP_05160558.1\| Alkylhydroperoxidase AhpD [Brucella abortus bv. 2 str. 86/8/59] gi\|254732175 - gi\|254732175\|ref\|ZP_05190753.1\| Alkylhydroperoxidase AhpD [Brucella abortus bv. 4 str. 292] gi\|254690947 - gi\|254690947\|ref\|ZP_05154201.1\| Alkylhydroperoxidase AhpD [Brucella abortus bv. 6 str. 870] gi\|254695744 - gi\|254695744\|ref\|ZP_05157572.1\| Alkylhydroperoxidase AhpD [Brucella abortus bv. 3 str. Tulya]	196.0	[0..1]	[175..1]
AHPD_STRCO - Alkyl hydroperoxide reductase AhpD OS=Streptomyces coelicolor GN=ahpD PE=3 SV=1 AHPD_STRCO - Alkyl hydroperoxide reductase AhpD OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) G...	194.0	[0..1]	[171..1]
AHPD_CORDI - Alkyl hydroperoxide reductase AhpD OS=Corynebacterium diphtheriae GN=ahpD PE=3 SV=1 AHPD_CORDI - Alkyl hydroperoxide reductase AhpD OS=Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 /...	188.0	[0..1]	[170..1]
AHPD_MYCPA - Alkyl hydroperoxide reductase AhpD OS=Mycobacterium paratuberculosis GN=ahpD PE=3 SV=1 gi\|254775316 - gi\|254775316\|ref\|ZP_05216832.1\| AhpD [Mycobacterium avium subsp. avium ATCC 25291] AHPD_MYCPA - Alkyl hydroperoxide reductase AhpD OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) GN...	184.0	[0..1]	[174..1]
gi\|84702543, gi\|... - gi\|84702543\|ref\|ZP_01017118.1\| AhpD, alkyl hydroperoxide reductase D [Parvularcula bermudensis HTCC2...	178.0	[0..1]	[171..1]
AHPD_COXBN - Alkyl hydroperoxide reductase AhpD OS=Coxiella burnetii (strain Dugway 5J108-111) GN=ahpD PE=3 SV=3 gi\|94490865, gi\|... - gi\|94490865\|ref\|ZP_01298091.1\| hypothetical protein CburD_01002043 [Coxiella burnetii Dugway 7E9-12]... AHPD_COXBR - Alkyl hydroperoxide reductase AhpD OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=ahpD PE=... AHPD_COXB2 - Alkyl hydroperoxide reductase AhpD OS=Coxiella burnetii (strain CbuG_Q212) GN=ahpD PE=3 SV=1 AHPD_COXBU - Alkyl hydroperoxide reductase AhpD OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=ahpD... AHPD_COXBU - Alkyl hydroperoxide reductase AhpD OS=Coxiella burnetii GN=ahpD PE=3 SV=3	175.0	[0..3]	[168..2]
AHPD_HYPNA - Alkyl hydroperoxide reductase AhpD OS=Hyphomonas neptunium (strain ATCC 15444) GN=ahpD PE=3 SV=1	171.0	[0..1]	[163..1]
AHPD_BRADU - Alkyl hydroperoxide reductase AhpD OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / ... AHPD_BRAJA - Alkyl hydroperoxide reductase AhpD OS=Bradyrhizobium japonicum GN=ahpD PE=3 SV=1	171.0	[0..1]	[172..1]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIDDLKSKI PDFAKDVRLN LSSMASDETL TPQQKYGLFV ACGIASRNAD VRKALVAEAA  60
   61 GKVDASVIQA AKAAASIMGM NNVYYRFVHL ASNKDYRTMP ARLRMNVISN PGVDKVDFEL 120
  121 WSLAVSAING CGMCIDAHED VLRKANVTAE AIQAAVRFAS IIQSAAIALE AADTE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.522879
Match:	1gu9A
Description:	Antioxidant defence protein AhpD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.832094458002337	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: