YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|221235893, gi...
Organism:	Caulobacter crescentus NA1000
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221235893, gi....

Description	E-value	Query Range	Subject Range
gi\|42518315, gi\|... - gi\|42518315\|ref\|NP_964245.1\| arsenical resistance operon repressor [Lactobacillus johnsonii NCC 533]...	111.0	[0..17]	[115..1]
gi\|158141387, gi... - gi\|158321188\|ref\|YP_001513695.1\| ArsR family transcriptional regulator [Alkaliphilus oremlandii OhIL...	110.0	[0..14]	[99..29]
gi\|89209648, gi\|... - gi\|89209648\|ref\|ZP_01188043.1\| regulatory protein, ArsR [Halothermothrix orenii H 168], gi\|89160717\|...	108.0	[0..1]	[107..30]
gi\|110673335, gi... - gi\|110798688\|ref\|YP_696978.1\| putative cadmium resistance transcriptional regulator CadC [Clostridiu... gi\|169347007, gi... - gi\|169347007\|ref\|ZP_02865949.1\| putative cadmium resistance transcriptional regulator CadC [Clostrid... gi\|177909258, gi... - gi\|182625570\|ref\|ZP_02953341.1\| putative cadmium resistance transcriptional regulator CadC [Clostrid... gi\|170663275, gi... - gi\|170663275\|gb\|EDT15958.1\| putative cadmium resistance transcriptional regulator CadC [Clostridium ... gi\|170711589, gi... - gi\|170711589\|gb\|EDT23771.1\| putative cadmium resistance transcriptional regulator CadC [Clostridium ... gi\|170715260, gi... - gi\|170715260\|gb\|EDT27442.1\| putative cadmium resistance transcriptional regulator CadC [Clostridium ... gi\|18145969, gi\|... - gi\|18311286\|ref\|NP_563220.1\| transcriptional regulator [Clostridium perfringens str. 13], gi\|1814596... gi\|182381216, gi... - gi\|182381216\|gb\|EDT78695.1\| putative cadmium resistance transcriptional regulator CadC [Clostridium ...	108.0	[0..11]	[106..24]
gi\|110803258, gi... - gi\|110803258\|ref\|YP_699565.1\| transcription repressor SmtB-like protein [Clostridium perfringens SM1...	107.0	[0..11]	[106..24]
gi\|67916590, gi\|... - gi\|67916590\|ref\|ZP_00510294.1\| regulatory protein, ArsR [Clostridium thermocellum ATCC 27405], gi\|67...	107.0	[0..14]	[108..44]
Y1325_METJA, YD2... - (Q58721) Putative HTH-type transcriptional regulator MJ1325, Uncharacterized HTH-type transcriptiona... Y1325_METJA - Uncharacterized HTH-type transcriptional regulator MJ1325 OS=Methanocaldococcus jannaschii (strain A... gi\|255051040, gi... - gi\|255051040\|ref\|ZP_05303303.1\| transcriptional regulator, ArsR family [Methanocaldococcus vulcanius...	107.0	[0..17]	[103..2]
gi\|242258589, gi... - gi\|242258589\|ref\|ZP_04803365.1\| transcriptional regulator, ArsR family [Thermoanaerobacter sp. X513]... gi\|241884097, gi... - gi\|241903582\|ref\|ZP_04788304.1\| transcriptional regulator, ArsR family [Thermoanaerobacter brockii s... gi\|166853664, gi... - gi\|167039424\|ref\|YP_001662409.1\| regulatory protein, ArsR [Thermoanaerobacter sp. X514], gi\|16685366... gi\|167036704, gi... - gi\|76796107\|ref\|ZP_00778475.1\| regulatory protein, ArsR [Thermoanaerobacter ethanolicus ATCC 33223],...	106.0	[0..11]	[99..26]
gi\|45723560, gi\|... - gi\|54307194\|ref\|YP_133724.1\| regulator of arsenical resistance [Lactobacillus plantarum WCFS1], gi\|4... gi\|45723560 - gi\|45723560\|emb\|CAG17841.1\| regulator of arsenical resistance [Lactobacillus plantarum WCFS1]	106.0	[0..17]	[114..1]
gi\|242229937, gi... - gi\|242258539\|ref\|ZP_04803326.1\| transcriptional regulator, ArsR family [Thermoanaerobacter sp. X513]... gi\|166854047, gi... - gi\|167039807\|ref\|YP_001662792.1\| regulatory protein, ArsR [Thermoanaerobacter sp. X514], gi\|16685404...	106.0	[0..14]	[104..29]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALMFDLTRF PVSQFEASAA QAAKLLRALS NERRLMILCQ LAEGERSVGQ IQPLVGLSQS  60
   61 ALSQHLAVLR DEGVVAARRE ATTVWYRIAD PAALKVVATL AEIFCPPAES ASHDPANDHS 120
  121 ADT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.154902
Match:	2jscA
Description:	No description for 2jscA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits