YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220952128
Organism:	synthetic construct
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220952128.

Description	E-value	Query Range	Subject Range
gi\|54639193, gi\|... - gi\|54639193\|gb\|EAL28595.1\| GA10300 [Drosophila pseudoobscura pseudoobscura], gi\|125776953\|ref\|XP_001... gi\|194112358, gi... - gi\|195152754\|ref\|XP_002017301.1\| GL22242 [Drosophila persimilis], gi\|194112358\|gb\|EDW34401.1\| GL2224... gi\|54639193\|gb\|E... - GA10300-PA [Drosophila pseudoobscura], GA10300 [Drosophila pseudoobscura pseudoobscura]	177.0	[0..1]	[113..1]
gi\|55241999, gi\|... - gi\|58382750\|ref\|XP_312147.2\| AGAP002777-PA [Anopheles gambiae str. PEST], gi\|55241999\|gb\|EAA07794.3\|... AGAP002777-PA - mRpS33: 28S ribosomal protein S33, mitochondrial\|protein_coding\|2R:27043420:27043755:1\|gene:AGAP0027...	168.0	[0..4]	[112..3]
gi\|73978838 - gi\|73978838\|ref\|XP_545480.2\| PREDICTED: similar to Mitochondrial 28S ribosomal protein S33 (S33mt) (...	168.0	[0..13]	[113..36]
gi\|3378458 - gi\|3378458\|emb\|CAA76895.1\| ganglioside-induced differentiation associated protein 3 [Mus musculus]	166.0	[0..13]	[113..26]
gi\|108880513, gi... - gi\|157103643\|ref\|XP_001648069.1\| mitochondrial ribosomal protein S33, putative [Aedes aegypti], gi\|1...	164.0	[0..4]	[112..3]
gi\|109692292, gi... - gi\|62647095\|ref\|XP_216135.3\| PREDICTED: similar to Mitochondrial 28S ribosomal protein S33 (S33mt) (...	159.0	[0..13]	[113..4]
gi\|39580553, gi\|... - gi\|39580553\|emb\|CAE70019.1\| Hypothetical protein CBG16434 [Caenorhabditis briggsae], gi\|187026461\|em...	156.0	[0..13]	[113..21]
gi\|76779212 - gi\|76779212\|gb\|AAI05794.1\| MRPS33 protein [Homo sapiens]	155.0	[0..13]	[111..5]
CE03250 - status:Partially_confirmed UniProt:Q19685 protein_id:CAA91037.1	153.0	[0..13]	[113..21]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHKYTELIK VGTQYARRMN YLSNRIFGEV ARTTNEKSMK VVRMFSEEPI HKRDYVINWY  60
   61 PRHVETHLLM KNLRDYGLFR DEHQDFKEEM KRLRKLRGKA PPKKGEGKRA SKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits