| Protein: | gi|195330083, gi... |
| Organism: | Drosophila sechellia |
| Length: | 487 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|195330083, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
412.0 | [0..1] | [487..1] |
|
Region A: Residues: [1-99] |
1 11 21 31 41 51
| | | | | |
1 MAQPRYDDGL HGYGMDSGAA AAAMYDPHAG HRPPGLQGLP SHHSPHMTHA AAAAATVGMH 60
61 GYHSGAGGHG TPSHVSPVGN HLMGAIPEVH KRDKDAIYE
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [100-214] |
1 11 21 31 41 51
| | | | | |
1 HPLFPLLALI FEKCELATCT PREPGVQGGD VCSSESFNED IAMFSKQIRS QKPYYTADPE 60
61 VDSLMVQAIQ VLRFHLLELE KVHELCDNFC HRYISCLKGK MPIDLVIDER DTTKP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [215-347] |
1 11 21 31 41 51
| | | | | |
1 PELGSANGEG RSNADSTSHT DGASTPDVRP PSSSLSYGGA MNDDARSPGA GSTPGPLSQQ 60
61 PPALDTSDPD GKFLSSLNPS ELTYDGRWCR REWSSPADAR NADASRRLYS SVFLGSPDNF 120
121 GTSASGDASN ASI
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [348-487] |
1 11 21 31 41 51
| | | | | |
1 GSGEGTGEED DDASGKKNQK KRGIFPKVAT NILRAWLFQH LTHPYPSEDQ KKQLAQDTGL 60
61 TILQVNNWFI NARRRIVQPM IDQSNRAVYT PHPGPSGYGH DAMGYMMDSQ AHMMHRPPGD 120
121 PGFHQGYPHY PPAEYYGQHL
|
| Detection Method: | |
| Confidence: | 11.0 |
| Match: | 1x2nA |
| Description: | Solution structure of the homeobox domain of human homeobox protein PKNOX1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.16896789933192 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.41271657675151 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
| transcription activator activity | 1.77700860354597 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.73068440195944 | bayes_pls_golite062009 |
| chromatin binding | 1.68956710349366 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| protein binding | 0.830419844171551 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
