YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220952988, gi...
Organism:	synthetic construct
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220952988, gi....

Description	E-value	Query Range	Subject Range
gi\|74222644 - gi\|74222644\|dbj\|BAE42195.1\| unnamed protein product [Mus musculus]	213.0	[0..1]	[247..5]
gi\|109491760, gi... - ref\|XP_213449.2\| similar to mitochondrial ribosomal protein L10 [Rattus norvegicus], gi\|157819877\|re...	210.0	[0..1]	[248..5]
gi\|119114220, gi... - gi\|119114220\|ref\|XP_319125.3\| ENSANGP00000012431 [Anopheles gambiae str. PEST], gi\|116118312\|gb\|EAA1...	202.0	[0..11]	[237..1]
RM10_DROPS - 39S ribosomal protein L10, mitochondrial precursor - Drosophila pseudoobscura (Fruit fly) RM10_DROPS - 39S ribosomal protein L10, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=mRpL10 PE=3 SV...	200.0	[0..1]	[237..1]
RK10_TOBAC - 50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1	190.0	[0..18]	[245..4]
gi\|73966176 - gi\|73966176\|ref\|XP_850888.1\| PREDICTED: similar to mitochondrial ribosomal protein L10 isoform a [Ca...	189.0	[0..1]	[246..5]
gi\|68245303, gi\|... - gi\|69260659\|ref\|ZP_00608127.1\| Ribosomal protein L10 [Magnetococcus sp. MC-1], gi\|68245303\|gb\|EAN274...	189.0	[0..75]	[241..4]
MRPL10 - mitochondrial ribosomal protein L10	188.0	[0..1]	[247..5]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLIQRSLS LAKSSTPALQ FLRFRGKINI QRPKAPHYER ARVVAVTQPK YPELPKAKSC  60
   61 FKTRAERTQQ QQENPYNEII AREVRNWLDH SRLVAFFHLS SITADDIFRV RVQLHKQNLH 120
  121 LKSYGSKIIE QAVKNTRYEA IVPLFHSNHC IVFSPDPEKT AALLRIVRRV PQMVLLGGIV 180
  181 EETMLSRNQL VAYAQMPGLH AVQAQLVQTL SQAPGHLIQQ LQAHQNSFVQ VLDVHAKNQM 240
  241 NEETPKST

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.69897
Match:	1zavA
Description:	Ribosomal Protein L10-L12(NTD) Complex, Space Group P21
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.21399440705185	bayes_pls_golite062009
structural molecule activity	8.64272477066313	bayes_pls_golite062009
binding	0.883379158418688	bayes_pls_golite062009
protein binding	0.184314459922274	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: