YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220957658, gi...
Organism:	synthetic construct
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220957658, gi....

Description	E-value	Query Range	Subject Range
gi\|122891090, gi... - gi\|62899050\|ref\|NP_001017401.1\| zinc finger, HIT domain containing 1 [Danio rerio], gi\|62531213\|gb\|A...	183.0	[0..4]	[150..5]
gi\|109066184 - gi\|109066184\|ref\|XP_001107895.1\| PREDICTED: zinc finger, HIT type 1 isoform 1 [Macaca mulatta]	177.0	[0..7]	[150..22]
gi\|73957813 - gi\|73957813\|ref\|XP_536855.2\| PREDICTED: similar to Zinc finger HIT domain containing protein 1 (Cycl... ZNHI1_BOVIN - Zinc finger HIT domain-containing protein 1 OS=Bos taurus GN=ZNHIT1 PE=2 SV=1 ENSCJAT00000031181 - null ZNHIT1 - zinc finger, HIT type 1 CCDS5716.1_1 - null gi\|114615130 - gi\|114615130\|ref\|XP_527843.2\| PREDICTED: zinc finger, HIT domain containing 1 [Pan troglodytes] gi\|109066182 - gi\|109066182\|ref\|XP_001107951.1\| PREDICTED: zinc finger, HIT type 1 isoform 2 [Macaca mulatta] gi\|123982920, gi... - gi\|123997601\|gb\|ABM86402.1\| zinc finger, HIT type 1 [synthetic construct], gi\|123982920\|gb\|ABM83201.... gi\|149755986 - gi\|149755986\|ref\|XP_001504511.1\| PREDICTED: similar to Zinc finger HIT domain-containing protein 1 (...	176.0	[0..4]	[150..5]
gi\|12848798, gi\|... - gi\|58037197\|ref\|NP_081594.1\| zinc finger, HIT domain containing 1 [Mus musculus], gi\|26348771\|dbj\|BA... tr\|D3ZNG9\|D3ZNG9_RAT - Uncharacterized protein OS=Rattus norvegicus GN=Znhit1	176.0	[0..1]	[150..1]
gi\|111305747, gi... - gi\|118403566\|ref\|NP_001017056.2\| zinc finger, HIT type 1 [Xenopus (Silurana) tropicalis], gi\|1113057...	173.0	[0..4]	[150..5]
gi\|194103297, gi... - gi\|195161282\|ref\|XP_002021497.1\| GL26482 [Drosophila persimilis], gi\|194103297\|gb\|EDW25340.1\| GL2648... gi\|125984380\|ref... - GA16563-PA [Drosophila pseudoobscura], GA16563 [Drosophila pseudoobscura pseudoobscura] gi\|54644272, gi\|... - gi\|54644272\|gb\|EAL33013.1\| GA16563 [Drosophila pseudoobscura pseudoobscura], gi\|125984380\|ref\|XP_001...	172.0	[0..1]	[151..1]
gi\|39593136, gi\|... - gi\|39593136\|emb\|CAE64605.1\| Hypothetical protein CBG09361 [Caenorhabditis briggsae], gi\|187031911\|em... gi\|157763718 - gi\|157763718\|ref\|XP_001674202.1\| Hypothetical protein CBG09361 [Caenorhabditis briggsae AF16]	170.0	[0..4]	[151..16]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGRESNRIK DAEKKRVLDS TARQRRARKA LEALEQDNYH DDPHADLVMS KKLPKFQDSL  60
   61 KTGKEKKGKR KGAEYFLVKY RKNFQQLLEE DKDKQPNYES AAAPAPQKPL RHFCAVCGNF 120
  121 SLYSCTACGT RYCCVRCLQT HQDTRCLKWT A

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits