YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220942804
Organism:	synthetic construct
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220942804.

Description	E-value	Query Range	Subject Range
gi\|194118062, gi... - gi\|195175385\|ref\|XP_002028435.1\| GL21292 [Drosophila persimilis], gi\|194118062\|gb\|EDW40105.1\| GL2129... gi\|125810276\|ref... - GA10704-PA [Drosophila pseudoobscura], GA10704 [Drosophila pseudoobscura pseudoobscura] gi\|125810276, gi... - gi\|54636597\|gb\|EAL26000.1\| GA10704 [Drosophila pseudoobscura pseudoobscura], gi\|125810276\|ref\|XP_001...	198.0	[0..1]	[266..1]
gi\|119114234, gi... - gi\|119114234\|ref\|XP_319140.3\| AGAP009997-PA [Anopheles gambiae str. PEST], gi\|116118319\|gb\|EAA13899.... AGAP009997-PA - Thioredoxin domain-containing protein 14 homolog precursor\|protein_coding\|3R:47430060:47430884:1\|gen...	194.0	[0..1]	[255..1]
gi\|157131114, gi... - gi\|157131114\|ref\|XP_001655808.1\| hypothetical protein AaeL_AAEL011995 [Aedes aegypti], gi\|108871651\|...	185.0	[0..1]	[269..1]
gi\|66514111 - gi\|66514111\|ref\|XP_394865.2\| PREDICTED: similar to CG11007-PA [Apis mellifera]	178.0	[0..1]	[255..1]
gi\|91085249 - gi\|91085249\|ref\|XP_973267.1\| PREDICTED: similar to Thioredoxin domain-containing protein 14 homolog ...	171.0	[0..1]	[255..1]
TMX2_MOUSE - Thioredoxin-related transmembrane protein 2 OS=Mus musculus GN=Tmx2 PE=1 SV=1	167.0	[0..7]	[265..18]
gi\|197365043, gi... - gi\|197365043\|ref\|YP_002144680.1\| thiol:disulfide interchange protein precursor [Salmonella enterica ... DSBD_SALPA - Thiol:disulfide interchange protein DsbD OS=Salmonella paratyphi A GN=dsbD PE=3 SV=1 DSBD_SALPA - Thiol:disulfide interchange protein DsbD OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=ds...	167.0	[0..16]	[237..326]
DSBD_SALTY - Thiol:disulfide interchange protein DsbD OS=Salmonella typhimurium GN=dsbD PE=3 SV=1 lcl\|NC_016856.1_... - [gene=dipZ] [protein=thiol:disulfide interchange protein] [protein_id=YP_005240633.1] [location=comp... gi\|205327424, gi... - gi\|205327424\|gb\|EDZ14188.1\| thiol:disulfide interchange protein DsbD [Salmonella enterica subsp. ent... DSBD_SALTY - Thiol:disulfide interchange protein DsbD OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700... DSBD_SALTY - Thiol:disulfide interchange protein dsbD OS=Salmonella typhimurium GN=dsbD PE=3 SV=1	167.0	[0..16]	[237..326]
DSBD_SALCH - Thiol:disulfide interchange protein DsbD OS=Salmonella choleraesuis GN=dsbD PE=3 SV=1 DSBD_SALCH - Thiol:disulfide interchange protein DsbD OS=Salmonella choleraesuis (strain SC-B67) GN=dsbD PE=3 SV=... DSBD_SALCH - Thiol:disulfide interchange protein dsbD OS=Salmonella choleraesuis GN=dsbD PE=3 SV=1	167.0	[0..16]	[237..326]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTWKKQMALL AKPYYWVNIL LAISYLLAKK TQFICTRLFI LAGEDEACDL DSREVEILFF  60
   61 LLIVVMIRSR KTGSVTMINY LASSFLYTKV ANAILWAYAD FRYGLGFLLL CVLVGMVLPE 120
  121 PSYRGP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [127-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EHITYFRNAQ VFEEELARDK RTSWLICFYT VWNPSCVNFA PVFAELSAEY NTDHLKFGKI  60
   61 DIGRFPDVAQ KYRISDSSFS RQLPTVILFQ QGKETDRRPC VDSKGKLQKF FFSSDNVRAT 120
  121 FGLNQLYKEA IERLPIAPKE AKKVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.154902
Match:	2dj0A
Description:	No description for 2dj0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits