YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167631717, gi...
Organism:	Bacillus anthracis str. A0442
Length:	410 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167631717, gi....

Description	E-value	Query Range	Subject Range
gi\|49476720, gi\|... - gi\|49476720\|ref\|YP_036636.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus thuringiensis serovar konk...	1.0E-98	[1..410]	[1..410]
gi\|51976441, gi\|... - gi\|52142972\|ref\|YP_083858.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus cereus E33L], gi\|51976441\|...	2.0E-98	[1..410]	[1..410]
gi\|30021626, gi\|... - gi\|30021626\|ref\|NP_833257.1\| S-layer protein / N-acetylmuramoyl-L-alanine amidase [Bacillus cereus A... gi\|228654682, gi... - gi\|229128794\|ref\|ZP_04257771.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus cereus BDRD-C...	4.0E-98	[1..410]	[1..410]
gi\|75762723, gi\|... - gi\|75762723\|ref\|ZP_00742557.1\| S-layer protein / N-acetylmuramoyl-L-alanine amidase [Bacillus thurin... gi\|228854585, gi... - gi\|228905040\|ref\|ZP_04069079.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus thuringiensis... gi\|218898613, gi... - gi\|218898613\|ref\|YP_002447024.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus cereus G9842...	2.0E-97	[1..410]	[1..410]
gi\|21400397, gi\|... - gi\|65319817\|ref\|ZP_00392776.1\| COG0860: N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis str. ...	2.0E-97	[1..410]	[1..409]
gi\|47569957, gi\|... - gi\|47569957\|ref\|ZP_00240621.1\| S-layer protein / N-acetylmuramoyl-L-alanine amidase [Bacillus cereus...	2.0E-95	[1..410]	[1..410]
gi\|170686050, gi... - gi\|170686050\|ref\|ZP_02877272.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis str... gi\|167638816, gi... - gi\|167638816\|ref\|ZP_02397091.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis str... gi\|167633391, gi... - gi\|167633391\|ref\|ZP_02391716.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis str... gi\|165869392, gi... - gi\|165869392\|ref\|ZP_02214051.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis str... gi\|227815362, gi... - gi\|227815362\|ref\|YP_002815371.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis st... gi\|229267752, gi... - gi\|229603344\|ref\|YP_002866240.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis st... gi\|228662055, gi... - gi\|229121412\|ref\|ZP_04250640.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus cereus 95/820... gi\|228945467, gi... - gi\|228945467\|ref\|ZP_04107819.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus thuringiensis... gi\|228845220, gi... - gi\|228914437\|ref\|ZP_04078048.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus thuringiensis... gi\|254755370 - gi\|254755370\|ref\|ZP_05207404.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis str... gi\|254741126 - gi\|254741126\|ref\|ZP_05198814.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis str... gi\|254734719 - gi\|254734719\|ref\|ZP_05192431.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis str... gi\|254723946 - gi\|254723946\|ref\|ZP_05185732.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis str... gi\|254759908 - gi\|254759908\|ref\|ZP_05211932.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis str... gi\|218902979, gi... - gi\|218902979\|ref\|YP_002450813.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus cereus AH820... gi\|49184696, gi\|... - gi\|49184696\|ref\|YP_027948.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis str. Sterne], gi... gi\|196033660, gi... - gi\|196033660\|ref\|ZP_03101072.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus cereus W], gi... gi\|47527105, gi\|... - gi\|47527105\|ref\|YP_018454.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis str. 'Ames Ances... gi\|190566393, gi... - gi\|190566393\|ref\|ZP_03019311.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis Tsi... gi\|30256089, gi\|... - gi\|30261861\|ref\|NP_844238.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis str. Ames], gi\|3... gi\|177650408, gi... - gi\|177650408\|ref\|ZP_02933375.1\| N-acetylmuramoyl-L-alanine amidase, family 3 [Bacillus anthracis str...	1.0E-79	[1..410]	[1..412]
gi\|42780958, gi\|... - gi\|42780958\|ref\|NP_978205.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus cereus ATCC 10987], gi\|427...	3.0E-77	[1..410]	[1..412]

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Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNKLIATGI LAGSLLSYST SIVADTHRFP DVPAWADKSV TYLVDKQVLS GYPDGTFGSS  60
   61 DTLDRASAAT IMTKALGIHI DLNAKPSFKD SQNHWGTPYI AAAEKAGIIK GEGNGIFNPS 120
  121 GKVTRAAMAT MLVNAYKLQN KNTSNGQSKF EDLKGHWGEK FANTLIDLKI SVGTDNGWQP 180
  181 NKFITRAEAA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [191-410]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLTAKTDMLQ YSHSNPLENK TIIIDPGHGG EDPGKDTKGL PESKIVLDTS LRLQKLLEKH  60
   61 TPFTVLLTRK SDTRPGHDQK SSLQERVKFA KQNQGDIFIS VHANAFNGNA KGTETYYYKS 120
  121 SKSEKTNPHV EESRVLAEKI QTRLVDALQT RDRGVKHGDL HVIRENDMPA VLTELAFIDN 180
  181 GIDYSKLSTE NGRQIAAEAI YEGILDYYEW KGNNVSEYRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	1jwqA
Description:	Structure of the catalytic domain of CwlV, N-acetylmuramoyl-L-alanine amidase from Bacillus(Paenibacillus) polymyxa var.colistinus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	2.96419846627716	bayes_pls_golite062009
N-acetylmuramoyl-L-alanine amidase activity	2.7637113983866	bayes_pls_golite062009
peptidase activity	2.52498601188672	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	2.30225769183213	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	2.30136636820249	bayes_pls_golite062009
carboxypeptidase activity	1.94157416461591	bayes_pls_golite062009
catalytic activity	1.3989281287879	bayes_pls_golite062009
exopeptidase activity	0.606503700246216	bayes_pls_golite062009
binding	0.252136075715404	bayes_pls_golite062009
metallopeptidase activity	0.117214777864168	bayes_pls_golite062009
protein binding	0.0314733407355351	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: