YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49258308
Organism:	Escherichia coli
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49258308.

Description	E-value	Query Range	Subject Range
gi\|33357064, gi\|... - gi\|33357064\|pdb\|1IU3\|F Chain F, Crystal Structure Of The E.Coli Seqa Protein Complexed With Hemimeth...	207.0	[0..1]	[115..2]
gi\|26246664, gi\|... - gi\|26246664\|ref\|NP_752704.1\| SeqA protein [Escherichia coli CFT073], gi\|26107063\|gb\|AAN79247.1\|AE016...	202.0	[0..5]	[115..116]
gi\|91209730, gi\|... - gi\|91209730\|ref\|YP_539716.1\| negative modulator of initiation of replication [Escherichia coli UTI89...	202.0	[0..5]	[115..116]
gi\|75511143 - gi\|75511143\|ref\|ZP_00733861.1\| COG3057: Negative regulator of replication initiationR [Escherichia c...	201.0	[0..5]	[115..94]
gi\|83585376 - gi\|83585376\|ref\|ZP_00924023.1\| COG3057: Negative regulator of replication initiationR [Escherichia c...	199.0	[0..5]	[115..63]
gi\|15829972, gi\|... - gi\|15829972\|ref\|NP_308745.1\| replication initiation regulator SeqA [Escherichia coli O157:H7 str. Sa... gi\|15829972, gi\|... - gi\|15829972\|ref\|NP_308745.1\| negative modulator of initiation of replication [Escherichia coli O157:... gi\|208822812, gi... - gi\|208822812\|ref\|ZP_03263130.1\| protein SeqA [Escherichia coli O157:H7 str. EC4042], gi\|208737005\|gb... gi\|209776718, gi... - pir\|\|F85568 negative modulator of initiation of replication [imported] - Escherichia coli (strain O1... gi\|209157869, gi... - gi\|209396469\|ref\|YP_002269315.1\| protein SeqA [Escherichia coli O157:H7 str. EC4115], gi\|209157869\|g... gi\|217321461, gi... - gi\|217325240\|ref\|ZP_03441324.1\| protein SeqA [Escherichia coli O157:H7 str. TW14588], gi\|217321461\|g... gi\|15800390, gi\|... - gi\|15800390\|ref\|NP_286402.1\| replication initiation regulator SeqA [Escherichia coli O157:H7 EDL933]... gi\|168786841, gi... - gi\|189373082\|gb\|EDU91498.1\| protein SeqA [Escherichia coli O157:H7 str. EC869], gi\|168786841\|ref\|ZP_... gi\|195939033 - gi\|195939033\|ref\|ZP_03084415.1\| replication initiation regulator SeqA [Escherichia coli O157:H7 str.... gi\|208729378, gi... - gi\|208809577\|ref\|ZP_03251914.1\| protein SeqA [Escherichia coli O157:H7 str. EC4206], gi\|208729378\|gb... gi\|254591239, gi... - gi\|254791839\|ref\|YP_003076676.1\| regulatory protein for replication initiation [Escherichia coli O15... gi\|208815671, gi... - gi\|208815671\|ref\|ZP_03256850.1\| protein SeqA [Escherichia coli O157:H7 str. EC4045], gi\|208732319\|gb... gi\|168757140, gi... - gi\|189355796\|gb\|EDU74215.1\| protein SeqA [Escherichia coli O157:H7 str. EC4401], gi\|168757140\|ref\|ZP... gi\|189363366, gi... - gi\|189363366\|gb\|EDU81785.1\| protein SeqA [Escherichia coli O157:H7 str. EC4486], gi\|168767128\|ref\|ZP... gi\|189003069, gi... - gi\|189003069\|gb\|EDU72055.1\| protein SeqA [Escherichia coli O157:H7 str. EC4076], gi\|168779172\|ref\|ZP...	199.0	[0..5]	[115..71]
SEQA_SHIFL - Negative modulator of initiation of replication OS=Shigella flexneri GN=seqA PE=3 SV=1 gi\|30040383, gi\|... - gi\|30062138\|ref\|NP_836309.1\| replication initiation regulator SeqA [Shigella flexneri 2a str. 2457T]... EG12197 - negative modulator of initiation of replication / Multi-faceted genome stability factor; negative mo... SEQA_ECOL6 - Negative modulator of initiation of replication OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 7009... gi\|170020967, gi... - gi\|170020967\|ref\|YP_001725921.1\| replication initiation regulator SeqA [Escherichia coli ATCC 8739],... gi\|170080356, gi... - gi\|170080356\|ref\|YP_001729676.1\| regulatory protein for replication initiation [Escherichia coli str... gi\|170684136, gi... - gi\|170684136\|ref\|YP_001742798.1\| protein SeqA [Escherichia coli SMS-3-5], gi\|170521854\|gb\|ACB20032.1... gi\|218704012, gi... - gi\|218704012\|ref\|YP_002411531.1\| replication initiation regulator SeqA [Escherichia coli UMN026], gi... gi\|124499714, gi... - gi\|124529711\|ref\|ZP_01700618.1\| SeqA family protein [Escherichia coli B], gi\|124499714\|gb\|EAY47198.1... gi\|187431119, gi... - gi\|187734127\|ref\|YP_001879315.1\| protein SeqA [Shigella boydii CDC 3083-94], gi\|187431119\|gb\|ACD1039... gi\|188492221, gi... - gi\|188492221\|ref\|ZP_02999491.1\| protein SeqA [Escherichia coli 53638], gi\|188487420\|gb\|EDU62523.1\| p... gi\|209917940, gi... - gi\|209917940\|ref\|YP_002292024.1\| replication initiation regulator SeqA [Escherichia coli SE11], gi\|2... SEQA_ECOLI - Protein seqA - Escherichia coli gi\|215263791, gi... - gi\|215485719\|ref\|YP_002328150.1\| replication initiation regulator SeqA [Escherichia coli O127:H6 str... SEQA_ECOL6 - Negative modulator of initiation of replication OS=Escherichia coli O6 GN=seqA PE=3 SV=1 gi\|218359989, gi... - gi\|218553221\|ref\|YP_002386134.1\| replication initiation regulator SeqA [Escherichia coli IAI1], gi\|2... gi\|218426058, gi... - gi\|218688494\|ref\|YP_002396706.1\| replication initiation regulator SeqA [Escherichia coli ED1a], gi\|2... EG12197 - negative modulator of initiation of replication / Multi-faceted genome stability factor; negative mo... gi\|218694116, gi... - gi\|218694116\|ref\|YP_002401783.1\| replication initiation regulator SeqA [Escherichia coli 55989], gi\|... gi\|227884338, gi... - gi\|227884338\|ref\|ZP_04002143.1\| DNA replication inhibitor SeqA [Escherichia coli 83972], gi\|22783842... gi\|218699042, gi... - gi\|218699042\|ref\|YP_002406671.1\| replication initiation regulator SeqA [Escherichia coli IAI39], gi\|... gi\|238899954, gi... - gi\|238899954\|ref\|YP_002925750.1\| regulatory protein for replication initiation [Escherichia coli BW2... gi\|242376450, gi... - gi\|251784177\|ref\|YP_002998481.1\| hypothetical protein B21_00635 [Escherichia coli BL21], gi\|24237645... gi\|56383249, gi\|... - gi\|56479698\|ref\|NP_706537.2\| replication initiation regulator SeqA [Shigella flexneri 2a str. 301], ... gi\|254287543, gi... - gi\|254287543\|ref\|YP_003053291.1\| regulatory protein for replication initiation [Escherichia coli BL2... gi\|74311215, gi\|... - gi\|74311215\|ref\|YP_309634.1\| replication initiation regulator SeqA [Shigella sonnei Ss046], gi\|73854... gi\|254160755, gi... - gi\|254160755\|ref\|YP_003043863.1\| regulatory protein for replication initiation [Escherichia coli B s... gi\|75234526 - gi\|75234526\|ref\|ZP_00718873.1\| COG3057: Negative regulator of replication initiationR [Escherichia c... gi\|89107545, gi\|... - gi\|89107545\|ref\|AP_001325.1\| regulatory protein for replication initiation [Escherichia coli str. K-... gi\|157160167, gi... - gi\|75194854\|ref\|ZP_00704924.1\| COG3057: Negative regulator of replication initiationR [Escherichia c... gi\|75189715, gi\|... - gi\|75189715\|ref\|ZP_00702982.1\| COG3057: Negative regulator of replication initiationR [Escherichia c... gi\|110640907, gi... - gi\|110640907\|ref\|YP_668635.1\| replication initiation regulator SeqA [Escherichia coli 536], gi\|11034...	199.0	[0..5]	[115..71]
gi\|75237381 - gi\|75237381\|ref\|ZP_00721423.1\| COG3057: Negative regulator of replication initiationR [Escherichia c...	199.0	[0..5]	[115..23]
gi\|81244532, gi\|... - gi\|82543121\|ref\|YP_407068.1\| replication initiation regulator SeqA [Shigella boydii Sb227], gi\|81244...	199.0	[0..5]	[115..71]

Back

Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLGSAMRELL LSDEYAEQKR AVNRFMLLLS TLYSLDAQAF AEATESLHGR TRVYFAADEQ  60
   61 TLLKNGNQTK PKHVPGTPYW VITNTNTGRK CSMIEHIMQS MQFPAELIEK VCGTI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.39794
Match:	1iu3C
Description:	Replication modulator SeqA, C-terminal DNA-binding domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.098272402754001	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: