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View Structure Prediction Details

Protein: gi|37811660, gi|...
Organism: Physcomitrella patens
Length: 545 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|37811660, gi|....

Predicted Domain #1
Region A:
Residues: [1-292]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSGGRPVAP VAVEYYLPNY KMGKTLGIGS FGKVKVAEHT PTGHKVAIKI LNRRKVKSMD  60
   61 MEEKVRREIK ILRLFMHPHI IRLYEVIETP TDIFVVMEYV KSGELFDYIV EKQRLGEDEA 120
  121 RRFFQQIVSG VEYCHRNMVV HRDLKPENLL LDSKWNVKIA DFGLSNIMRD GHFLKTSCGS 180
  181 PNYAAPEVIS GKLYAGPEVD VWSCGVILYA LLCGSLPFDD ENIPNLFRKI KGGIYTLPSH 240
  241 LSPGARDLIP RMLLVDPMKR VTIPEIRQHP WFLNHLPRYL AVPPPDTLQQ AK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 80.0
Match: 2fh9A
Description: No description for 2fh9A was found.

Predicted Domain #2
Region A:
Residues: [293-363]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RIDEEILERV VALNFDRVHL IESLLNRVQN KATVAYYLML DNRRRLSNGY LGSEFDEGKE  60
   61 QSLSPMSPYG A

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.17
Match: 1vekA
Description: Solution Structure of RSGI RUH-011, a UBA Domain from Arabidopsis cDNA
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [364-545]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HGGTPRSTYP RSLIRTPSMD RRGSSSSVLQ HRVVAERKWA LGVQLRSHPK EIMSDVLDTL  60
   61 RKCDINWKKT GAYNLKCRWV APNQHLNDRA SEHRGIPDSP MAGTTPRVSS GRWSSEQQGI 120
  121 SGSVASGNKD DESGVESNVL KFELQLFKMR EEKYLLDLQR VEGPTYLFLD LFSAFLIELR 180
  181 VA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.30103
Match: 2v8qA
Description: No description for 2v8qA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle