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View Structure Prediction Details

Protein: gi|220955244, gi...
Organism: synthetic construct
Length: 267 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220955244, gi....

Description E-value Query
Range
Subject
Range
gi|109492061 - gi|109492061|ref|XP_001081563.1| PREDICTED: similar to Cytochrome b561 (Cytochrome b-561) [Rattus no...
268.0 [0..7] [258..262]
gi|125809905, gi... - gi|54636451|gb|EAL25854.1| GA21312-PA [Drosophila pseudoobscura], gi|125809905|ref|XP_001361276.1| G...
263.0 [0..1] [267..1]
CG8776-PA - This gene is referred to in FlyBase by the symbol Dmel\CG8776 (CG8776, FBgn0033764). It is a protein...
gi|220950450, gi... - gi|220959386|gb|ACL92236.1| CG8776-PA [synthetic construct], gi|220950450|gb|ACL87768.1| CG8776-PA [...
249.0 [0..17] [267..40]
gi|55240611, gi|... - gi|58385667|ref|XP_314125.2| ENSANGP00000023949 [Anopheles gambiae str. PEST], gi|55240611|gb|EAA445...
243.0 [0..18] [267..1]
CY561_MOUSE - Cytochrome b561 OS=Mus musculus GN=Cyb561 PE=1 SV=2
237.0 [0..24] [258..4]
CY561_PONPY - Cytochrome b561 - Pongo pygmaeus (Orangutan)
CY561_PONAB - Cytochrome b561 OS=Pongo abelii GN=CYB561 PE=2 SV=1
233.0 [0..21] [258..2]
gi|109116771 - gi|109116771|ref|XP_001116102.1| PREDICTED: similar to Cytochrome b561 (Cytochrome b-561) [Macaca mu...
231.0 [0..21] [258..2]
gi|27597088, gi|... - ref|NP_001906.2| cytochrome b-561 [Homo sapiens], gi|12804235|gb|AAH02976.1| Cytochrome b-561 [Homo...
231.0 [0..21] [258..2]
gi|292, gi|89501... - pir||S01167 cytochrome b561 - bovine, gi|292|emb|CAA31274.1| unnamed protein product [Bos taurus], ...
229.0 [0..24] [259..27]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDRHLAKMP RGGTTTSRYE EDPDNAWNCC SWCEYLLIVI LSTILLVGVL VLTLFWVMFY  60
   61 RDGFAWSESP KQQFNLHPIL MIAGFVTLSG FSILIYRLCR CVK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [104-267]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QIYVKLIHMF FHAVAIPCIA LGFISVFASH DALHKVNFYS LHSWLGFVTM GMFVLQFVIG  60
   61 FFSFLVMLCC ENKTYSCRSA MVPIHASLGL ANFWLAIATS VTGLIEKERE TVNEAGVSSE 120
  121 NKLVEHYITS AIGVTLIFIG IIVTFAVRRS NAPASAKVYV TERI

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.44
Match: 1kqfC
Description: Formate dehydrogenase N, cytochrome (gamma) subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.349353660965659 bayes_pls_golite062009
binding 0.0102629993652836 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle