YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|52695529, gi\|...
Organism:	Escherichia coli
Length:	96 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52695529, gi|....

Description	E-value	Query Range	Subject Range
gi\|85059030, gi\|... - gi\|85059030\|ref\|YP_454732.1\| ribonuclease E [Sodalis glossinidius str. 'morsitans'], gi\|84779550\|dbj...	133.0	[0..5]	[96..34]
gi\|117673235, gi... - gi\|77629539\|ref\|ZP_00792125.1\| COG1530: Ribonucleases G and E [Yersinia pseudotuberculosis IP 31758]...	130.0	[0..5]	[96..31]
gi\|51590083, gi\|... - gi\|51596801\|ref\|YP_070992.1\| ribonuclease E [Yersinia pseudotuberculosis IP 32953], gi\|51590083\|emb\|... Q669K5\|Q669K5_YERPS - Ribonuclease E - Yersinia pseudotuberculosis	130.0	[0..5]	[96..34]
gi\|89102257 - gi\|89102257\|ref\|ZP_01174905.1\| COG1530: Ribonucleases G and E [Yersinia pestis biovar Orientalis str...	130.0	[0..5]	[96..31]
gi\|165925486, gi... - gi\|165925486\|ref\|ZP_02221318.1\| ribonuclease E [Yersinia pestis biovar Orientalis str. F1991016], gi... gi\|16121858, gi\|... - gi\|218928726\|ref\|YP_002346601.1\| ribonuclease E [Yersinia pestis CO92], gi\|16121858\|ref\|NP_405171.1\|... gi\|149366506, gi... - gi\|149366506\|ref\|ZP_01888540.1\| ribonuclease E [Yersinia pestis CA88-4125], gi\|149290880\|gb\|EDM40955... gi\|167402397, gi... - gi\|167402397\|ref\|ZP_02307860.1\| ribonuclease E [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|1... gi\|166204210, gi... - gi\|166214603\|ref\|ZP_02240638.1\| ribonuclease E [Yersinia pestis biovar Antiqua str. B42003004], gi\|1... gi\|165992535, gi... - gi\|166008153\|ref\|ZP_02229051.1\| ribonuclease E [Yersinia pestis biovar Antiqua str. E1979001], gi\|16... gi\|165913624, gi... - gi\|165938509\|ref\|ZP_02227066.1\| ribonuclease E [Yersinia pestis biovar Orientalis str. IP275], gi\|16... gi\|229841578, gi... - gi\|229841578\|ref\|ZP_04461737.1\| RNase E [Yersinia pestis biovar Orientalis str. PEXU2], gi\|229697944... gi\|229894435, gi... - gi\|229894435\|ref\|ZP_04509617.1\| RNase E [Yersinia pestis Pestoides A], gi\|229703454\|gb\|EEO90471.1\| R... gi\|229689298, gi... - gi\|229843690\|ref\|ZP_04463833.1\| RNase E [Yersinia pestis biovar Orientalis str. India 195], gi\|22968... gi\|108807930, gi... - gi\|108807930\|ref\|YP_651846.1\| ribonuclease E [Yersinia pestis Antiqua], gi\|108779843\|gb\|ABG13901.1\| ... gi\|166960200, gi... - gi\|167421715\|ref\|ZP_02313468.1\| ribonuclease E [Yersinia pestis biovar Orientalis str. MG05-1020], g... gi\|45436916, gi\|... - gi\|45442053\|ref\|NP_993592.1\| ribonuclease E [Yersinia pestis biovar Microtus str. 91001], gi\|4543691... gi\|25289274 - pir\|\|AI0193 ribonuclease E (EC 3.1.4.-) [imported] - Yersinia pestis (strain CO92)	130.0	[0..5]	[96..34]
gi\|108775848, gi... - gi\|229902525\|ref\|ZP_04517644.1\| RNase E [Yersinia pestis Nepal516], gi\|229680571\|gb\|EEO76668.1\| RNas... gi\|167427020, gi... - gi\|167427020\|ref\|ZP_02318773.1\| ribonuclease E [Yersinia pestis biovar Mediaevalis str. K1973002], g... gi\|22125643, gi\|... - gi\|22125643\|ref\|NP_669066.1\| ribonuclease E [Yersinia pestis KIM], gi\|21958554\|gb\|AAM85317.1\|AE01377... gi\|145599138, gi... - gi\|145599138\|ref\|YP_001163214.1\| ribonuclease E [Yersinia pestis Pestoides F], gi\|145210834\|gb\|ABP40...	130.0	[0..5]	[96..34]
gi\|77958126 - gi\|77958126\|ref\|ZP_00822165.1\| COG1530: Ribonucleases G and E [Yersinia bercovieri ATCC 43970]	130.0	[0..5]	[96..31]
gi\|238795958, gi... - gi\|77963603\|ref\|ZP_00827411.1\| COG1530: Ribonucleases G and E [Yersinia mollaretii ATCC 43969], gi\|2...	130.0	[0..5]	[96..31]
gi\|36786163, gi\|... - gi\|37526731\|ref\|NP_930075.1\| ribonuclease E [Photorhabdus luminescens subsp. laumondii TTO1], gi\|367...	130.0	[0..5]	[96..34]
gi\|77979989 - gi\|77979989\|ref\|ZP_00835404.1\| COG1530: Ribonucleases G and E [Yersinia intermedia ATCC 29909]	130.0	[0..5]	[96..31]

Back

Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHMLEQKKA NIYKGKITRI EPSLEAAFVD YGAERHGFLP LKEIAREYFP ANYSAHGRPN  60
   61 IKDVLREGQE VIVQIDKEER GNKGAALTTF ISLAGS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.154902
Match:	1sljA
Description:	Solution structure of the S1 domain of RNase E from E. coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.141433535514844	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: