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View Structure Prediction Details

Protein: gi|218192805
Organism: Oryza sativa Indica Group
Length: 187 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218192805.

Description E-value Query
Range
Subject
Range
gi|74006513 - gi|74006513|ref|XP_537965.2| PREDICTED: similar to ribosomal protein L18 [Canis familiaris]
288.0 [0..1] [186..1]

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Predicted Domain #1
Region A:
Residues: [1-187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIDLVAGGR NKKTKRTAPK SDDVYLKLIV KLYRFLVRRT KSPFNAVILR RLFMSKTNRP  60
   61 PLSLRRLVRF MEGKENQIAV IVGTVTDDKR VYEVPAMKVA ALRFTETARA RIVNTGGECL 120
  121 TFDQLALRAP LGQNTVLLRG PKNAREAVKH FGPAPGVPHS NTKPYVRSKG RKFEKARGRR 180
  181 NSKGFKV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.221849
Match: 1s1iO
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle