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View Structure Prediction Details

Protein: gi|162675316, gi...
Organism: Physcomitrella patens subsp. patens
Length: 693 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|162675316, gi....

Predicted Domain #1
Region A:
Residues: [1-135]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPQKFDFVD WWSKEVRRGT PVVVKMENPN YSMLEIESPK SSFEDQKDKE KNAKQLTWVL  60
   61 LLKAHRAAGC VAWVWSGVMI LLAAIKKRLI LGQGLAQQDK PHKGKLFKAI TGFLVFAVMM 120
  121 LCVEVAAHAL SWHFS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [136-475]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPHWPSSFRI QDLPHVVYVG WMYFRASYIA PTLQKLTDFC IWLFLIQSVD RIVLFLGCVY  60
   61 IRWKGLKPVP INPSLESDDA ENPDSGHPMV LVQIPMCNER EVYEQSISAV CQLDWPKSRI 120
  121 LIQVLDDSSD VETRFLIKSE VSKWQQKGVN IVYRHRVNRT GYKAGNMKSA MQCDYVKKYE 180
  181 FVAIFDADFQ PKSDFLKRTV PHFRDNPELA LVQTRWSFVN KDENLLTRLQ NINLSFHFEV 240
  241 EQQVNGIFIN FFGFNGTAGV WRITALEESG GWLERTTVED MDIAVRAHLQ GWKFIFLNDV 300
  301 RCLCELPESY EAYRKQQHRW HSGPMQLFRL CFPDIIKAKI 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.221849
Match: 2z86A
Description: No description for 2z86A was found.

Predicted Domain #3
Region A:
Residues: [476-693]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SWMKKANMIF LFFLLRKLIL PFYSFTLFCI ILPLTMFVPE ATLPVWVVCY IPALMSILNV  60
   61 IPSPKSFPFL VPYLLFENTM SVTKFNAMIS GLFQLSSAHE WVVTKKTGRA SEGDVLEKDT 120
  121 ARSTVALDKT MSESGIDALK TLDVKLDPLV PPSVHDALQP PMKKKNRLYR KELLLSFLLL 180
  181 TAAARSLLSA QGIHFYFLLF QGISFLVVGL DLIGEQVS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle