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View Structure Prediction Details

Protein: GLE1_ARATH
Organism: Arabidopsis thaliana
Length: 611 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLE1_ARATH.

Description E-value Query
Range
Subject
Range
gi|4850395, gi|2... - gi|4850395|gb|AAD31065.1|AC007357_14 EST gb|N37870 comes from this gene. [Arabidopsis thaliana], pir...
340.0 [0..1] [611..1]

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Predicted Domain #1
Region A:
Residues: [1-292]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIVLEPPCP KSVDGISIDP EPNWNFESLV AEIASVEKKL NGFSMYPQPI TNTTLRMGRR  60
   61 GGGFVMHVSE DEMESDEGEE SDDEEEEEDH SQICTAGKRF ACDELYLSDE SDEEFDHEPE 120
  121 YMMNKLGLAE SALYEVINDH QTEIKDDIRN QVSVVETEIM NEIETSLSAI ARVEKYSETR 180
  181 KEVERKLDLQ YQRKVAEALD THLTAVQREH KIKSQIEERK IRSEEAQEEA RRKERAHQEE 240
  241 KIRQEKARAE AQMLAKIRAE EEKKEVERKA AREVAEKEVA DRKAAEQKLA EQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.0
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [293-408]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KAVIESVTGS SATSNAQAGG NSIRAAESAL ILENHRLKKL EELETTNQSL KSRSNENFSS  60
   61 FEKHIGRVIR QISGTKDSVS GKINDIVKIF KDPRCPVSIS IAAFAKKMVT TKEKPN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.30103
Match: 2dfsA
Description: No description for 2dfsA was found.

Predicted Domain #3
Region A:
Residues: [409-611]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFACSYVIVY INSQFPQVMD ILLAEFHKAC IYTVPKHIVN SQSAWDSDAY ERLDSIMRLY  60
   61 GALVQTDIRV GNATNVHGIE HGWAWLARFL NKIPANRATA TALNSFLQTA GFGLHQRYKS 120
  121 QFLKVVNVVR EHFLQKLRAK KDTSDLLVII AEITAYLDDR MYLKEPEGRA MKTTSTLSSE 180
  181 LTAELNQPNY NQNYQRNDYR NYY

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 27.236572
Match: PF07817.4
Description: No description for PF07817.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle