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View Structure Prediction Details

Protein: gi|30683966, gi|...
Organism: Arabidopsis thaliana
Length: 257 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30683966, gi|....

Description E-value Query
Range
Subject
Range
gi|9279705 - gi|9279705|dbj|BAB01262.1| unnamed protein product [Arabidopsis thaliana]
206.0 [0..1] [257..1]

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Predicted Domain #1
Region A:
Residues: [1-257]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENLNHKWDR CSSSHQTPLS FKGNQKQIGQ GQREVFTHFV SLPLAIYPDL TKNIEAFQNS  60
   61 VLGNNDKDPL KFQSTLAEMG IEKSIFVTPK TFHLTVVMLK LENNESVVKA QNILQSIFSN 120
  121 VRQALKNRPV FIRLRGLECM SGSLDKTRVL YAPVEEVGRE GRLLNACHVI IDAFENVGFA 180
  181 GKDAKSRLKL HATLMNASYR KDKSKKMDTF DAREIHKEFE NKDWGTYLIR EAHISQRYKY 240
  241 DPNGYFHCCA SLPFPHK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.522879
Match: 1vdxA
Description: Crystal Structure of a Pyrococcus horikoshii protein with similarities to 2'5' RNA-ligase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle