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View Structure Prediction Details

Protein: gi|215712238, gi...
Organism: Oryza sativa Japonica Group
Length: 531 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215712238, gi....

Description E-value Query
Range
Subject
Range
gi|50915280, gi|... - gi|50915280|ref|XP_468104.1| smr (Small MutS Related) domain-containing protein -like [Oryza sativa ...
425.0 [0..1] [481..21]
CID7_ARATH - Polyadenylate-binding protein-interacting protein 7 OS=Arabidopsis thaliana GN=CID7 PE=1 SV=1
417.0 [0..20] [531..18]
gi|66848309, gi|... - gi|70991655|ref|XP_750676.1| Smr domain protein [Aspergillus fumigatus Af293], gi|66848309|gb|EAL886...
276.0 [0..39] [529..73]
gi|83767238 - gi|83767238|dbj|BAE57377.1| unnamed protein product [Aspergillus oryzae]
gi|169769819 - gi|169769819|ref|XP_001819379.1| hypothetical protein [Aspergillus oryzae RIB40]
276.0 [0..39] [528..61]

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Predicted Domain #1
Region A:
Residues: [1-174]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLNKVVSN GDTRSMLPNK VTALNPNAAE FVPSCIRPSF ESSAVSDVSK ADLRASGKTI  60
   61 LDRSESSKSN NSDDEAHQFW RKQLPDDIIP DFSFEKIEQE PEELSLAGLS LNAPPFYGTT 120
  121 ASRFSREHDL SSQANKSLEL GLTSLLYEDN SQASFPTMGS SNWEQNFVGD LHFT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [175-262]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGNQGLHYDS ESAAGFSDSF ASDYAAATDD VLDPLAYLAS QFPDFSSESL AELYYANGCD  60
   61 FNHTIEILTQ LEMQVDATSN PTLTPRTP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [263-362]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NFSTGDFPAL PTVEDQNGFS KGNADILSIF NGRSSPSVST GTGDFVSAVR KLASQNSGHW  60
   61 KYKKGPEYGN GVSTVSVPKQ YSSTTKTSSG NKFQSVSSAR 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [363-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAPWLETGDA VANMYSESRG EARDFARIRN ACFEQARQAY LIGNKALAKE LSMKGQTYNT  60
   61 QMKASHEKAR EAIYRQRN

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 13.79588
Match: PF08590.1
Description: No description for PF08590.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [441-531]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSSQRGSDRL IDLHGLHVNE AIHILKVELG TLKSTARATG ERMQVMICVG TGHHTKGSRT  60
   61 ARLPIAVEQF LLEEGLHYTQ AQPGLLRVVV F

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.0
Match: 2d9iA
Description: No description for 2d9iA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle