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View Structure Prediction Details

Protein: NFYBA_ARATH
Organism: Arabidopsis thaliana
Length: 176 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NFYBA_ARATH.

Description E-value Query
Range
Subject
Range
gi|15231796, gi|... - gi|6729485|emb|CAB67641.1| transcription factor NF-Y, CCAAT-binding-like protein [Arabidopsis thalia...
168.0 [0..1] [165..1]
gi|90186489 - gi|90186489|gb|ABD91517.1| transcription factory NF-YB [Salvia miltiorrhiza]
155.0 [0..1] [148..1]
gi|68397353 - gi|68397353|ref|XP_684783.1| PREDICTED: similar to nuclear transcription factor-Y beta [Danio rerio]
152.0 [0..7] [176..9]
gi|26347857 - gi|26347857|dbj|BAC37577.1| unnamed protein product [Mus musculus]
150.0 [0..5] [172..30]
gi|116181802, gi... - gi|88185826|gb|EAQ93294.1| hypothetical protein CHGG_01529 [Chaetomium globosum CBS 148.51], gi|1161...
148.0 [0..2] [174..17]
NFYB_MAIZE - Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1
147.0 [0..2] [175..4]

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Predicted Domain #1
Region A:
Residues: [1-176]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAESQTGGGG GGSHESGGDQ SPRSLNVREQ DRFLPIANIS RIMKRGLPLN GKIAKDAKET  60
   61 MQECVSEFIS FVTSEASDKC QREKRKTING DDLLWAMATL GFEDYIDPLK VYLMRYREME 120
  121 GDTKGSGKGG ESSAKRDGQP SQVSQFSQVP QQGSFSQGPY GNSQGSNMMV QMPGTE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.154902
Match: 1n1jA
Description: Nuclear transcription factor Y subunit beta (Nf-Yb3)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle