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View Structure Prediction Details

Protein: gi|52077288, gi|...
Organism: Oryza sativa Japonica Group
Length: 575 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|52077288, gi|....

Description E-value Query
Range
Subject
Range
gi|86438636 - gi|86438636|emb|CAJ26368.1| hypothetical protein [Brachypodium sylvaticum]
517.0 [0..175] [572..3]

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Predicted Domain #1
Region A:
Residues: [1-194]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVALLSPA AAAAVVTEGE EKPPLEEVEV EVEVVVRAIV ADGDGREANA AAPGANWCGE  60
   61 EEVPAHAAEG GTVAAMVDEN AAAPAAEGDT VAAAKGEAPA AEGDMVVAAK GAAHAAAEGD 120
  121 TVAAAAVAGE NEAAHAPAAG GNTVAAAADV KGEALQAIPV ADEAAAVAEG VNAIAAAERE 180
  181 EDDEGVKWLK HYSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.69897
Match: 1y0fB
Description: No description for 1y0fB was found.

Predicted Domain #2
Region A:
Residues: [195-395]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQSILTVGDG DFSFSLALAT AFGSGDNLVA TSLDTIEDLR GKYSKAESNI MELKRMGATV  60
   61 LHGIDAKRMK DHTNLKLRRF DRIIFNFPHA GFKGKEDDLH MINLHRELVW GFFQNARHLL 120
  121 RPYGEIHVSH KIGLPYDRWC IEHLAYESSL TMIAKVDFRK EDYPGYNQKR GDSAKCDQPF 180
  181 ELGACCTFMF MRDLTRLKRA R

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.13
Match: 2fcaA
Description: No description for 2fcaA was found.

Predicted functions:

Term Confidence Notes
catalytic activity 0.639646908254091 bayes_pls_golite062009
transferase activity 0.394707018913607 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.0810339077201343 bayes_pls_golite062009
methyltransferase activity 0.0737551340470768 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [396-575]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNRINASSLG IQAQHDMPFH PRPLVPAYPQ PHFPSQVNAA HRQVPPEHYP LGIAHGQEPG  60
   61 FLDNFGGIER YPYQRGAIGT VIGMPGTPSP MRGITRSSFP APQEQPWRQE RYIMDPEVRD 120
  121 DHYHFAREYP RNLQEYEMER QVMPGGTRLR YVDFLENRYE ESVRRQEHLR RLIAEYGGYD 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle