Protein: | PUB12_ORYSJ |
Organism: | Oryza sativa Japonica Group |
Length: | 611 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB12_ORYSJ.
Description | E-value | Query Range |
Subject Range |
|
348.0 | [0..1] | [603..1] |
|
320.0 | [0..5] | [607..15] |
|
272.0 | [0..15] | [600..45] |
Region A: Residues: [1-76] |
1 11 21 31 41 51 | | | | | | 1 MPKRVADEIA ALPEPRGPLR RPCADLSRRV RLLAPLLDHL PASSSSSSST PLADALGAAR 60 61 DLLRKTRDGS KIDQAM |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.921 | a.7.16 | Description not found. |
Region A: Residues: [77-220] |
1 11 21 31 41 51 | | | | | | 1 RGDAFLDEFA GVNRQIHLAL DALPYNTFHM PQEVQEQVAL VHSQFQRAST RTDPPDTQLS 60 61 MDLAWALTDN PSDPALLTRI SHKLQLHTMA DMKNESIALH NMVISTAGEP DGCVDQMSSL 120 121 LKKLKDCVVT EDHANDALTT RSAS |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.805 | N/A | N/A | a.29.13 | Description not found. |
Region A: Residues: [221-305] |
1 11 21 31 41 51 | | | | | | 1 IKHRSPIIPD EFRCPISLEL MQDPVIVSSG QTYERSCIQK WLDSGHKTCP KTQQPLSHTS 60 61 LTPNFVLKSL ISQWCEANGI ELPKN |
Detection Method: | |
Confidence: | 6.69897 |
Match: | 1t1hA |
Description: | NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [306-611] |
1 11 21 31 41 51 | | | | | | 1 KQNSRDKKAA KSSDYDHAGL VSLMNRLRSG NQDEQRAAAG EIRLLAKRNV NNRICIAEAG 60 61 AIPLLVNLLS SSDPRTQEHA VTALLNLSIH ENNKASIVDS HAIPKIVEVL KTGSMETREN 120 121 AAATLFSLSV VDENKVTIGA AGAIPPLINL LCDGSPRGKK DAATAIFNLC IYQGNKVRAV 180 181 KAGIVIHLMN FLVDPTGGMI DEALSLLSIL AGNPEGKIVI ARSEPIPPLV EVIKTGSPRN 240 241 RENAAAILWL LCSADTEQTL AAKAAGVEDA LKELSETGTD RAKRKASSIL ELMHQANEDS 300 301 LKGNGH |
Detection Method: | |
Confidence: | 42.0 |
Match: | 1wa5B |
Description: | Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP |
Matching Structure (courtesy of the PDB): |