YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|326465
Organism:	Human immunodeficiency virus 1
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|326465.

Description	E-value	Query Range	Subject Range
gi\|108752033 - gi\|108752033\|gb\|ABG02913.1\| chimeric TaReNef-DC-LAMP protein [synthetic construct]	202.0	[0..2]	[101..28]
gi\|57338569, gi\|... - gi\|57338569\|gb\|AAW49363.1\| tat protein [Human immunodeficiency virus 1], gi\|46486640\|gb\|AAS98746.1\| ...	185.0	[0..1]	[101..1]
gi\|2194191 - gi\|2194191\|gb\|AAB61129.1\| tat protein [Human immunodeficiency virus type 1] TAT_HV192 - Protein Tat OS=Human immunodeficiency virus type 1 group M subtype C (isolate 92BR025) GN=tat PE=3 S...	182.0	[0..1]	[101..1]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPVDPRLEP WKHPGSQPKT ACTNCYCKKC CFHCQVCFTK KALGISYGRK KRRQRRRAHQ  60
   61 DSQNHQASLS KQPSSQTRGD PTGPKEPKKE VEREAETDPL D

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Detection Method:	PSI-BLAST
Confidence:	29.39794
Match:	1tacA
Description:	HIV-1 TAT CYS-, NMR, 10 STRUCTURES
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits