YRC Public Data Repository - Protein Structure Prediction

Protein:	IL8_HORSE
Organism:	Equus caballus
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IL8_HORSE.

Description	E-value	Query Range	Subject Range
gi\|1082968 - pir\|\|A53096 interleukin-8 precursor - pig IL8_PIG - Interleukin-8 OS=Sus scrofa GN=CXCL8 PE=1 SV=1	114.0	[0..1]	[99..1]
gi\|55741690 - ref\|NP_001003200.1\| interleukin 8 [Canis familiaris] IL8_CANLF - Interleukin-8 OS=Canis lupus familiaris GN=CXCL8 PE=3 SV=1	113.0	[0..1]	[101..1]
IL8_RABIT - Interleukin-8 OS=Oryctolagus cuniculus GN=CXCL8 PE=1 SV=2	110.0	[0..1]	[99..1]
IL8_FELCA - Interleukin-8 OS=Felis catus GN=CXCL8 PE=3 SV=1	107.0	[0..1]	[100..1]
gi\|17907787 - gi\|17907787\|dbj\|BAB79448.1\| interleukin-8 [Triakis scyllium]	104.0	[0..1]	[99..1]
gi\|114671857 - gi\|114671857\|ref\|XP_001172226.1\| PREDICTED: similar to Small inducible cytokine A3-like 1 precursor ...	104.0	[0..4]	[93..42]
IL8_HORSE - (O62812) Interleukin-8 precursor (IL-8) (CXCL8) (Fragment)	103.0	[0..1]	[97..1]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSKLAVALL AVFLLSAALC EAAVVSRITA ELRCQCIKTH SKPFNPKLIK EMRAIESGPH  60
   61 CENSEIIVKL VNGAEVCLNP HTKWVQIIVQ AFLKRAEGQN P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.045757
Match:	1iklA
Description:	NMR STUDY OF MONOMERIC HUMAN INTERLEUKIN-8 (MINIMIZED AVERAGE STRUCTURE)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits