YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: E2FC_ARATH
Organism: Arabidopsis thaliana
Length: 396 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for E2FC_ARATH.

Description E-value Query
Range
Subject
Range
gi|14149097 - gi|14149097|dbj|BAB55644.1| E2F-5-like protein AtE2F2 [Arabidopsis thaliana]
424.0 [0..1] [396..1]
gi|22086272 - gi|22086272|gb|AAM90621.1|AF400001_1 E2F-related transcription factor 2 [Thlaspi caerulescens]
363.0 [0..1] [393..1]
gi|77553720 - gi|77553720|gb|ABA96516.1| Transcription factor E2F/dimerisation partner family protein, expressed [...
316.0 [0..46] [391..21]
gi|11558192 - gi|11558192|emb|CAC17702.1| transcription factor (E2F) [Chenopodium rubrum]
313.0 [0..40] [391..3]
gi|5763821 - gi|5763821|emb|CAB53258.1| E2F protein [Triticum sp.]
308.0 [0..18] [391..6]

Back

Predicted Domain #1
Region A:
Residues: [1-130]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATSNSGED PTLSYHHRSP FRFELLQSIS SSDPRYSSLT PSSTNRPFSV SQSLPNSQLS  60
   61 PLISPHWDDS YSQITQKVQK SRKNHRIQLG SIANMSGGES IDIAKVIVKQ ESSPQNVKRV 120
  121 YNKSKGGTKL 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [131-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKAGKRMANG EVQNGGLNGA SINCRYDSSL GLLTKKFVKL IQEAEDGTLD LNYCAVVLEV  60
   61 QKRRIYDITN VLEGIGLIEK TTKNHIRWK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.0
Match: 1cf7A
Description: Cell cycle transcription factor E2F-4
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [220-396]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GADNLGQKDL GDQISRLKSE VESMQSEESR LDDLIRERQE ALRSLEEDDY CRRYMFMTEE  60
   61 DITSLPRFQN QTLLAIKAPT ASYIEVPDPD EMSFPQQYRM VIRSRMGPID VYLLSKYKGD 120
  121 SAETSDKLGN ESDQKAPVGV DTPSLKIVTS DTDLKADYWF ESDAEVSLTD LWSNFNS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.39794
Match: 2azeB
Description: Structure of the Rb C-terminal domain bound to an E2F1-DP1 heterodimer
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle