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View Structure Prediction Details

Protein: gi|157349300, gi...
Organism: Vitis vinifera
Length: 244 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157349300, gi....

Description E-value Query
Range
Subject
Range
gi|20385584 - gi|20385584|gb|AAM21342.1|AF373601_1 MADS-box protein 2 [Vitis vinifera]
252.0 [0..1] [244..1]
gi|63014399 - gi|63014399|gb|AAY25580.1| AGL6 [Amborella trichopoda]
252.0 [0..1] [244..1]
gi|34979582 - gi|34979582|gb|AAQ83835.1| MADS box protein [Asparagus officinalis]
252.0 [0..1] [244..1]
gi|28372802 - gi|28372802|gb|AAL08423.2|AF185574_1 transcription factor MAGL4 [Populus tremuloides]
249.0 [0..1] [244..1]
gi|3646340 - gi|3646340|emb|CAA04325.1| MADS-box protein [Malus x domestica]
248.0 [0..1] [244..1]
gi|63094573 - gi|63094573|gb|AAY30858.1| MADS-box transcription factor [Prunus dulcis]
248.0 [0..1] [244..1]
gi|73810196 - gi|73810196|gb|AAZ86071.1| MADS-box protein [Glycine max]
248.0 [0..1] [244..1]
gi|6683777 - gi|6683777|gb|AAF23363.1|AF135962_1 CAGL2 [Cucumis sativus]
247.0 [0..1] [244..1]

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Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA  60
   61 GTTKTLERYQ RVCYTPQDNN 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.30103
Match: 1tqeP
Description: Mechanism of recruitment of class II histone deacetylases by myocyte enhancer factor-2
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [81-244]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MECETQSWYQ EVSKLKAKYE SLQRTQRHLL GEDLGPLSVK ELQNLEKQLE GALAQARQRK  60
   61 TQMMIEQMED LRRKERQLGD LNKQLKLKLE AEGQSLKAIQ GSWNPSTATA GNSSFPVHPS 120
  121 QSNPMDCEPE PILQIGYHHY VPAEGPSVSK SMAGESNFIQ GWVL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 25.267606
Match: PF01486.9
Description: No description for PF01486.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle