YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|36784268, gi\|...
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36784268, gi|....

Description	E-value	Query Range	Subject Range
gi\|25371894, gi\|... - pir\|\|B64735 yacC protein - Escherichia coli (strain K-12), pir\|\|F90644 hypothetical protein ECs0126... gi\|1786313, gi\|4... - gi\|49175998\|ref\|NP_414664.3\| hypothetical protein b0122 [Escherichia coli K12], gb\|AAC73233.1\| orf, ... gi\|13359582 - gi\|13359582\|dbj\|BAB33549.1\| hypothetical protein [Escherichia coli O157:H7] gi\|15799806, gi\|... - gi\|15799806\|ref\|NP_285818.1\| hypothetical protein Z0132 [Escherichia coli O157:H7 EDL933], gi\|125128... gi\|13359582 - gi\|13359582\|dbj\|BAB33549.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi\|81239559, gi\|... - gi\|82775411\|ref\|YP_401757.1\| hypothetical protein SDY_0029 [Shigella dysenteriae Sd197], gi\|81239559... gi\|81244136, gi\|... - gi\|82542725\|ref\|YP_406672.1\| hypothetical protein SBO_0111 [Shigella boydii Sb227], gi\|81244136\|gb\|A... gi\|74310740, gi\|... - gi\|74310740\|ref\|YP_309159.1\| hypothetical protein SSON_0130 [Shigella sonnei Ss046], gi\|73854217\|gb\|...	203.0	[0..1]	[115..42]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKLALLTYI LVLFGLSHPA KALTENEAED LADLTAVFIY LKYDCGYSQI PDREIKRAII  60
   61 YFAQRNKWDL TNYNSQLMDK LNEESYQDLK GIYLSNAIKC HALARDSLSL FAYVK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.742	a.4.12	TrpR-like
View	Download	0.709	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.642	a.74.1	Cyclin-like
View	Download	0.631	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.610	a.4.1	Homeodomain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits