YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|37524868, gi|...
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 171 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37524868, gi|....

Description E-value Query
Range
Subject
Range
gi|28807503 - gi|28807503|dbj|BAC60768.1| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase [Vi...
gi|28899279, gi|... - gi|28899279|ref|NP_798884.1| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin e pyrophosphokinase [V...
gi|153840011, gi... - gi|153840011|ref|ZP_01992678.1| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase ...
231.0 [0..1] [161..1]

Back

Predicted Domain #1
Region A:
Residues: [1-171]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARVYIAVGS NLAEPMQQVK NALAALKDLP ETECIACSSL YRTKPMGPQN QPDFLNAAVA  60
   61 LETTLAPEEL LNHTQAIELT QGRVRKDERW GPRTLDLDIM LFGDQVINTE RLTVPHYGLK 120
  121 QREFMLYPLA EIAPDLIFPD GEALSERLKH IPENGLALWL QPQSSDSNHY I

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.0
Match: 1dy3A
Description: 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity 5.95418117400583 bayes_pls_golite062009
diphosphotransferase activity 4.79017391246148 bayes_pls_golite062009
catalytic activity 2.44295736158702 bayes_pls_golite062009
transferase activity 1.5312510694044 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.34283740138285 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle