YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP6_PHOLL
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP6_PHOLL.

Description	E-value	Query Range	Subject Range
ATP6_YERPB - ATP synthase subunit a OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=atpB PE=3 SV=1 ATP6_YERPY - ATP synthase subunit a OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=atpB PE=3 SV=1 gi\|229839837, gi... - gi\|229839837\|ref\|ZP_04459996.1\| F0 sector of membrane-bound ATP synthase, subunit a [Yersinia pestis... gi\|229896798, gi... - gi\|229896798\|ref\|ZP_04511961.1\| F0 sector of membrane-bound ATP synthase, subunit a [Yersinia pestis... gi\|229691260, gi... - gi\|229841921\|ref\|ZP_04462077.1\| F0 sector of membrane-bound ATP synthase, subunit a [Yersinia pestis... ATP6_YERP3 - ATP synthase subunit a OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=atpB PE=3 S... gi\|149290347, gi... - gi\|150260939\|ref\|ZP_01917667.1\| ATP synthase subunit B protein [Yersinia pestis CA88-4125], gi\|14929... ATP6_YERPP - ATP synthase subunit a OS=Yersinia pestis (strain Pestoides F) GN=atpB PE=3 SV=1 ATP6_YERPS - ATP synthase subunit a OS=Yersinia pseudotuberculosis GN=atpB PE=3 SV=1 ATP6_YERPN - ATP synthase subunit a OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=atpB PE=3 SV=1 ATP6_YERPA - ATP synthase subunit a OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=atpB PE=3 SV=1 gi\|21961157, gi\|... - gi\|22128009\|ref\|NP_671432.1\| F0F1 ATP synthase subunit A [Yersinia pestis KIM], gi\|21961157\|gb\|AAM87... ATP6_YERPE - ATP synthase subunit a OS=Yersinia pestis GN=atpB PE=3 SV=1 ATP6_YERPS - ATP synthase subunit a OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=atpB PE=3 SV=1 gi\|45443757, gi\|... - gi\|45443757\|ref\|NP_995296.1\| F0F1 ATP synthase subunit A [Yersinia pestis biovar Microtus str. 91001... gi\|115349714, gi... - gi\|218931103\|ref\|YP_002348978.1\| F0F1 ATP synthase subunit A [Yersinia pestis CO92], gi\|16124235\|ref...	201.0	[0..1]	[274..1]

Back

Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASGEVSTA RDYIGHHLNN LQLDLRTFEL VDPNSGGSAT FWTLNIDSLF FSVVLGILFL  60
   61 YVFRKVAV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [69-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NATSGVPGKL QTAIELIMGF VDNSVRDMYH GKSKVIAPLA LTVFVWVLLM NVMDLLPIDF  60
   61 LPYIGEHFFG LPALRVVPTA DVSVTLSMAI GVFVLILYYS IKMKGIGGFT KELTLQPFNH 120
  121 PLFIPINLIL EGVSLLSKPV SLGLRLFGNM YAGELIFILI AGLLPWWSQW LLSLPWAIFH 180
  181 ILIITLQAFI FMVLTIVYLS MASEEH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.39794
Match:	1c17M
Description:	F1F0 ATP synthase subunit A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrogen ion transporting ATP synthase activity, rotational mechanism	14.916062574431	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	13.3765277511271	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	11.6266555949852	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	10.5141571800158	bayes_pls_golite062009
cation transmembrane transporter activity	6.7755175807552	bayes_pls_golite062009
ion transmembrane transporter activity	6.66886754588748	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	6.24164033661356	bayes_pls_golite062009
proton-transporting ATPase activity, rotational mechanism	5.34968915140418	bayes_pls_golite062009
transporter activity	4.44683838532142	bayes_pls_golite062009
substrate-specific transporter activity	4.37473908570954	bayes_pls_golite062009
transmembrane transporter activity	4.36056336888635	bayes_pls_golite062009
cation-transporting ATPase activity	3.33662712450334	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	1.11865103919948	bayes_pls_golite062009
primary active transmembrane transporter activity	0.517601509369888	bayes_pls_golite062009
active transmembrane transporter activity	0.511311810386796	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	0.510137962484563	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	0.476924701765357	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	0.473395661531507	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	0.473285892250811	bayes_pls_golite062009
catalytic activity	0.276917867171685	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.242742762516199	bayes_pls_golite062009
pyrophosphatase activity	0.201337507209354	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.191294406773539	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.188721983770471	bayes_pls_golite062009
ATPase activity, coupled	0.110491424400621	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: