YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|36784694, gi\|...
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36784694, gi|....

Description	E-value	Query Range	Subject Range
NADD_SALTY - Nicotinate-nucleotide adenylyltransferase OS=Salmonella typhimurium GN=nadD PE=3 SV=1 NADD_SALCH - Probable nicotinate-nucleotide adenylyltransferase OS=Salmonella choleraesuis GN=nadD PE=3 SV=1 NADD_SALPB - Probable nicotinate-nucleotide adenylyltransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 /... NADD_SALTY - Nicotinate-nucleotide adenylyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 70... NADD_SALPA - Probable nicotinate-nucleotide adenylyltransferase OS=Salmonella paratyphi A GN=nadD PE=3 SV=1 NADD_SALAR - Probable nicotinate-nucleotide adenylyltransferase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC... NADD_SALTY - Nicotinate-nucleotide adenylyltransferase OS=Salmonella typhimurium GN=nadD PE=3 SV=1 NADD_SALCH - Probable nicotinate-nucleotide adenylyltransferase OS=Salmonella choleraesuis GN=nadD PE=3 SV=1 NADD_SALCH - Probable nicotinate-nucleotide adenylyltransferase OS=Salmonella choleraesuis (strain SC-B67) GN=nad... NADD_SALPA - Probable nicotinate-nucleotide adenylyltransferase OS=Salmonella paratyphi A (strain ATCC 9150 / SAR... NADD_SALPB - Probable nicotinate-nucleotide adenylyltransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 /... lcl\|NC_016856.1_... - [gene=nadD] [protein=nicotinic acid mononucleotide adenylyltransferase] [protein_id=YP_005236361.1] ... gi\|194457210, gi... - gi\|194470846\|ref\|ZP_03076830.1\| nicotinate (nicotinamide) nucleotide adenylyltransferase [Salmonella... gi\|205360775, gi... - gi\|205360775\|ref\|ZP_02686395.2\| nicotinate (nicotinamide) nucleotide adenylyltransferase [Salmonella... gi\|205357571, gi... - gi\|205357571\|ref\|ZP_02571754.2\| nicotinate (nicotinamide) nucleotide adenylyltransferase [Salmonella... NADD_SALPK - Probable nicotinate-nucleotide adenylyltransferase OS=Salmonella paratyphi A (strain AKU_12601) GN=n...	206.0	[0..17]	[224..6]

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Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPHAIDSTCP KQPVIKALFG GTFDPIHYGH LQPVETLAYQ TGLNQVILLP NHVPPHRPQP  60
   61 EATAQQRLEM VQLAVQDSPL FTVDKRELER TIPSYTIDTL ESFRQELGNK QPLAFIIGQD 120
  121 ALLSLHTWHR WQELLSFCHL LVCARPGYQT QFSTTEMQQW LTKHQIYDPS QLGSKPNGYI 180
  181 YLADTPLLSI SATDIRQRHQ QGLSCDDLLP LSVQKYIDSQ GLYRQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.69897
Match:	1k4kA
Description:	Nicotinamide mononucleotide (NMN) adenylyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nicotinate-nucleotide adenylyltransferase activity	2.83520682135534	bayes_pls_golite062009
nicotinamide-nucleotide adenylyltransferase activity	2.57110502211876	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	2.54008423253828	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	2.54008423253828	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	2.52910114154477	bayes_pls_golite062009
catalytic activity	2.37674226834122	bayes_pls_golite062009
ligase activity	1.92894388839884	bayes_pls_golite062009
adenylyltransferase activity	1.08055019963499	bayes_pls_golite062009
pantetheine-phosphate adenylyltransferase activity	0.454904507512502	bayes_pls_golite062009
pantoate-beta-alanine ligase activity	0.282286652169846	bayes_pls_golite062009
nucleotidyltransferase activity	0.2293846471193	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: