YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|36784718, gi\|...
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36784718, gi|....

Description	E-value	Query Range	Subject Range
gi\|71725271, gi\|... - gi\|71725271\|ref\|YP_272311.1\| DNA-damage-inducible protein [Pseudomonas syringae pv. phaseolicola 144...	110.0	[0..1]	[87..11]
gi\|62464768, gi\|... - gi\|62464768\|ref\|YP_220380.1\| hypothetical protein p49879_1p03 [Leptospirillum ferrooxidans], gi\|6073...	108.0	[0..1]	[87..1]
gi\|94497088, gi\|... - gi\|94497088\|ref\|ZP_01303661.1\| RelB antitoxin [Sphingomonas sp. SKA58], gi\|94423460\|gb\|EAT08488.1\| R...	107.0	[0..1]	[87..1]
gi\|22997809, gi\|... - gi\|71902524\|ref\|ZP_00684448.1\| RelB antitoxin [Xylella fastidiosa Ann-1], gi\|71727752\|gb\|EAO30021.1\|...	107.0	[0..1]	[87..1]
gi\|19070020, gi\|... - gi\|19352353\|ref\|NP_598111.1\| damage inducible-like protein [uncultured bacterium], gi\|19070020\|emb\|C...	106.0	[0..1]	[85..1]
gi\|28057089, gi\|... - gi\|28198991\|ref\|NP_779305.1\| DNA-damage-inducible protein [Xylella fastidiosa Temecula1], gi\|2805708... gi\|182681705, gi... - gi\|182681705\|ref\|YP_001829865.1\| addiction module antitoxin [Xylella fastidiosa M23], gi\|182631815\|g...	105.0	[0..1]	[87..1]
gi\|22994058, gi\|... - gi\|71276753\|ref\|ZP_00653019.1\| RelB antitoxin [Xylella fastidiosa Dixon], gi\|71162454\|gb\|EAO12190.1\|... gi\|71902224, gi\|... - gi\|71902224\|ref\|ZP_00684232.1\| RelB antitoxin [Xylella fastidiosa Ann-1], gi\|71728018\|gb\|EAO30231.1\|...	105.0	[0..1]	[87..1]
gi\|165908995, gi... - gi\|165933908\|ref\|YP_001650697.1\| DNA-damage-inducible protein J [Rickettsia rickettsii str. Iowa], g... gi\|228022290, gi... - gi\|229587240\|ref\|YP_002845741.1\| DNA-damage-inducible protein J [Rickettsia africae ESF-5], gi\|22802... gi\|238651116, gi... - gi\|238651116\|ref\|YP_002916974.1\| DNA-damage-inducible protein J [Rickettsia peacockii str. Rustic], ... gi\|42454378 - gi\|42454378\|ref\|ZP_00154285.1\| COG3077: DNA-damage-inducible protein J [Rickettsia rickettsii] gi\|157829180, gi... - gi\|157829180\|ref\|YP_001495422.1\| DNA-damage-inducible protein J [Rickettsia rickettsii str. 'Sheila ...	101.0	[0..1]	[87..1]
gi\|67005298, gi\|... - gi\|67459765\|ref\|YP_247389.1\| DNA-damage-inducible protein J [Rickettsia felis URRWXCal2], gi\|6700529...	101.0	[0..1]	[87..1]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATNQLVQTR IDGEIKTEAA AVLAAMGLTV SDAVRMMLTR VAREKVLPFE PLVPNETTIA  60
   61 AMKEARKGCG KSFSTVKDLM ADLNADD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	30.408935
Match:	PF04221.3
Description:	No description for PF04221.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.624	N/A	N/A	a.60.16	Description not found.
View	Download	0.553	N/A	N/A	a.60.16	Description not found.
View	Download	0.502	N/A	N/A	a.69.2	Ypt/Rab-GAP domain of gyp1p
View	Download	0.474	N/A	N/A	a.69.2	Ypt/Rab-GAP domain of gyp1p
View	Download	0.460	N/A	N/A	a.60.16	Description not found.
View	Download	0.444	N/A	N/A	a.76.1	Iron-dependent represor protein, dimerization domain
View	Download	0.413	N/A	N/A	f.14.1	Voltage-gated potassium channels
View	Download	0.411	N/A	N/A	a.76.1	Iron-dependent represor protein, dimerization domain
View	Download	0.410	N/A	N/A	f.14.1	Voltage-gated potassium channels
View	Download	0.373	N/A	N/A	d.58.7	RNA-binding domain, RBD

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits