YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|37525341, gi|...
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 139 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37525341, gi|....

Description E-value Query
Range
Subject
Range
gi|26249594, gi|... - gi|26249594|ref|NP_755634.1| hypothetical protein c3763 [Escherichia coli CFT073], gi|26110002|gb|AA...
178.0 [0..2] [139..20]

Back

Predicted Domain #1
Region A:
Residues: [1-139]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKKIFITTA LITLFSMPSM AQASQTQFGG FSGPDSTQPP VQAVPQGGFI DQNARVSTTQ  60
   61 QVKNMRDDSW VVLEGHIESR IHSDHFIFRD NAGIVEVEVD HKYWNGQTIT PQDRVRLEGE 120
  121 VDKEWNGMTV DVKKVTKLN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.154902
Match: 1nnxA
Description: Structure of the hypothetical protein ygiW from E. coli.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle