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View Structure Prediction Details

Protein: PTH_PHOLL
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 196 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTH_PHOLL.

Description E-value Query
Range
Subject
Range
PTH_SHIBS - Peptidyl-tRNA hydrolase OS=Shigella boydii serotype 4 (strain Sb227) GN=pth PE=3 SV=1
289.0 [0..4] [194..3]

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Predicted Domain #1
Region A:
Residues: [1-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNIKLIVGL ANPGAEYAQT RHNAGAWYVD LLARSHNQSL KEESKFFGYT ARINICGHDV  60
   61 RLLVPTTFMN LSGKSVVALA SFYRIQPDEI LVAHDELDLP PGVAKMKLGG SHGGHNGLKD 120
  121 IQNKFGNNPN FYRLRIGIGH PGDKNKVVGF VLGKPPASEQ QLIDDAIDEA RRCTDILMKQ 180
  181 DMDKAINRLH SFKASV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.522879
Match: 2pthA
Description: PEPTIDYL-TRNA HYDROLASE FROM ESCHERICHIA COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
aminoacyl-tRNA hydrolase activity 2.30458185525664 bayes_pls_golite062009
catalytic activity 1.41033217274476 bayes_pls_golite062009
binding 1.31642757964381 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.904773408466145 bayes_pls_golite062009
protein binding 0.606551407946731 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle