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View Structure Prediction Details

Protein: gi|36786683, gi|...
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 115 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36786683, gi|....

Description E-value Query
Range
Subject
Range
gi|84387680, gi|... - gi|84387680|ref|ZP_00990697.1| Small protein A [Vibrio splendidus 12B01], gi|84377525|gb|EAP94391.1|...
gi|148980257, gi... - gi|148980257|ref|ZP_01815965.1| Small protein A [Vibrionales bacterium SWAT-3], gi|145961351|gb|EDK2...
156.0 [0..1] [114..1]

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Predicted Domain #1
Region A:
Residues: [1-115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCKMLTAAA VSFVMLTAGC STLERAVYRP DINQGNYLTP TSVSKIHKGM TQQQVAYTLG  60
   61 TPMLQDPFGT QTWFYVFRQQ PGHEKVTQQT LTLTFDSNGV LTDIKNENSL TEDLQ

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 35.318759
Match: PF04355.4
Description: No description for PF04355.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.849 N/A N/A d.105.1 Clathrin adaptor appendage, alpha and beta chain-specific domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle