YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|36787138, gi\|...
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	180 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36787138, gi|....

Description	E-value	Query Range	Subject Range
gi\|45440653, gi\|... - gi\|45440653\|ref\|NP_992192.1\| primosomal replication protein n'' [Yersinia pestis biovar Microtus str... gi\|21957805, gi\|... - gi\|22124963\|ref\|NP_668386.1\| primosomal replication protein n'' [Yersinia pestis KIM], gi\|21957805\|g... gi\|165936020, gi... - gi\|89104120\|ref\|ZP_01176673.1\| COG3923: Primosomal replication protein N'' [Yersinia pestis biovar O... gi\|108808610, gi... - gi\|108808610\|ref\|YP_652526.1\| primosomal replication protein n'' [Yersinia pestis Antiqua], gi\|10878... gi\|15981065, gi\|... - gi\|218930157\|ref\|YP_002348032.1\| primosomal replication protein n'' [Yersinia pestis CO92], gi\|16123... gi\|108774776, gi... - gi\|229901359\|ref\|ZP_04516481.1\| primosomal replication protein n'' [Yersinia pestis Nepal516], gi\|22... gi\|229899297, gi... - gi\|229899297\|ref\|ZP_04514440.1\| primosomal replication protein n'' [Yersinia pestis biovar Orientali... gi\|229896118, gi... - gi\|229896118\|ref\|ZP_04511288.1\| primosomal replication protein n'' [Yersinia pestis Pestoides A], gi... gi\|77635878, gi\|... - gi\|77635878\|ref\|ZP_00797957.1\| COG3923: Primosomal replication protein N'' [Yersinia pestis Angola],... gi\|229838729, gi... - gi\|229838729\|ref\|ZP_04458888.1\| primosomal replication protein n'' [Yersinia pestis biovar Orientali... gi\|167469129 - gi\|167469129\|ref\|ZP_02333833.1\| primosomal replication protein n'' [Yersinia pestis FV-1] gi\|170025419, gi... - gi\|170025419\|ref\|YP_001721924.1\| primosomal replication priB and priC [Yersinia pseudotuberculosis Y... gi\|165927670, gi... - gi\|165927670\|ref\|ZP_02223502.1\| primosomal replication protein n'' [Yersinia pestis biovar Orientali... gi\|166011061, gi... - gi\|166011061\|ref\|ZP_02231959.1\| primosomal replication protein n'' [Yersinia pestis biovar Antiqua s... gi\|166213092, gi... - gi\|166213092\|ref\|ZP_02239127.1\| primosomal replication protein n'' [Yersinia pestis biovar Antiqua s... gi\|167051546, gi... - gi\|167399042\|ref\|ZP_02304566.1\| primosomal replication protein n'' [Yersinia pestis biovar Antiqua s... gi\|167421699, gi... - gi\|167421699\|ref\|ZP_02313452.1\| primosomal replication protein n'' [Yersinia pestis biovar Orientali... gi\|167423273, gi... - gi\|167423273\|ref\|ZP_02315026.1\| primosomal replication protein n'' [Yersinia pestis biovar Mediaeval... gi\|152959306, gi... - gi\|77631954\|ref\|ZP_00794540.1\| COG3923: Primosomal replication protein N'' [Yersinia pseudotuberculo... gi\|149365027, gi... - gi\|149365027\|ref\|ZP_01887062.1\| primosomal replication protein n'' [Yersinia pestis CA88-4125], gi\|1... gi\|25359080 - pir\|\|AG0379 primosomal replication protein n'' [imported] - Yersinia pestis (strain CO92) gi\|145211717, gi... - gi\|145600021\|ref\|YP_001164097.1\| primosomal replication protein n'' [Yersinia pestis Pestoides F], g...	162.0	[0..1]	[178..1]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTQPLLNLL EKQVDILAEE IAPLADTPFS TARFDQALFN RHSDKLRGYL QEVRHNMEQL  60
   61 KECVQDHRTE QVAFLTERLV AQIEALRREL STQSLRKKES RFEHKQQATD LYHKLAEHQD 120
  121 YERRLLAMIN DRELKLNQQT TLSHQQKIQK EIAALAGRLA RCRQSLMRIE KSIEYKENMD 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.57
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits