YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|36785710, gi\|...
Organism:	Photorhabdus luminescens subsp. laumondii TTO1
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36785710, gi|....

Description	E-value	Query Range	Subject Range
gi\|251785086, gi... - gi\|251785086\|ref\|YP_002999390.1\| hypothetical protein B21_01588 [Escherichia coli BL21], gi\|24237735... gi\|254288479, gi... - gi\|254288479\|ref\|YP_003054227.1\| electron transport complex protein RnfB [Escherichia coli BL21(DE3)... gi\|253973591, gi... - gi\|254161690\|ref\|YP_003044798.1\| electron transport complex protein RnfB [Escherichia coli B str. RE... EG13934 - SoxR iron-sulfur cluster reduction factor component; putative iron-sulfur protein / SoxR iron-sulfur... RNFB_ECOLI - Electron transport complex protein rnfB - Escherichia coli gi\|124499989, gi... - gi\|124529215\|ref\|ZP_01700290.1\| electron transport complex, RnfABCDGE type, B subunit [Escherichia c... RSXB_ECOLC - Electron transport complex subunit RsxB OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) G... RSXB_ECODH - Electron transport complex subunit RsxB OS=Escherichia coli (strain K12 / DH10B) GN=rsxB PE=3 SV=1 gi\|89108470, gi\|... - gi\|89108470\|ref\|AP_002250.1\| predicted iron-sulfur protein [Escherichia coli str. K-12 substr. W3110... RSXB_ECO8A - Electron transport complex subunit RsxB OS=Escherichia coli O8 (strain IAI1) GN=rsxB PE=3 SV=1 gi\|194431902, gi... - gi\|83571014\|ref\|ZP_00922456.1\| COG2878: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Shig... gi\|194424684, gi... - gi\|83587963\|ref\|ZP_00926589.1\| COG2878: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Esch... RSXB_ECOHS - Electron transport complex subunit RsxB OS=Escherichia coli O9:H4 (strain HS) GN=rsxB PE=3 SV=1 gi\|75234941, gi\|... - gi\|75234941\|ref\|ZP_00719220.1\| COG2878: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Esch... EG13934 - SoxR iron-sulfur cluster reduction factor component; putative iron-sulfur protein / SoxR iron-sulfur... RSXB_ECOBW - Electron transport complex subunit RsxB OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=rsxB P...	141.0	[0..1]	[189..1]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLWIAIGA LSALGLIFGL ILGFAARRFQ VEEDPIVENI DDILPQSQCG QCGYPGCRPY  60
   61 AEAVANNGEM INKCAPGGEQ VMLKISELLG IDPQPLDGDA NLQNPARKVA FIDEENCIGC 120
  121 TKCIQACPVD AIVGATRAMH TIVEDLCTGC DLCVAPCPTD CITMIPVATT TSNWKWDLKT 180
  181 IPVRNIPVQP SHAISIKSIP IKNIEAEHHV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.154902
Match:	1kqfB
Description:	Formate dehydrogenase N, iron-sulfur (beta) subunit; Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits