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View Structure Prediction Details

Protein: gi|37526501, gi|...
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 225 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37526501, gi|....

Description E-value Query
Range
Subject
Range
gi|26108314, gi|... - gi|26247911|ref|NP_753951.1| riboflavin synthase subunit alpha [Escherichia coli CFT073], gi|2610831...
gi|190906311, gi... - gi|75238779|ref|ZP_00722763.1| COG0307: Riboflavin synthase alpha chain [Escherichia coli F11], gi|1...
gi|110343377, gi... - gi|110641785|ref|YP_669515.1| riboflavin synthase subunit alpha [Escherichia coli 536], gi|110343377...
gi|227837099, gi... - gi|227885920|ref|ZP_04003725.1| riboflavin synthase subunit alpha [Escherichia coli 83972], gi|22783...
301.0 [0..1] [214..1]

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Predicted Domain #1
Region A:
Residues: [1-225]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTGIVQGKA PLVAIDEKSN FRTHVVKFPA ELLPGIETGA SVANNGCCLT VTKIEGDEIS  60
   61 FDLMKETLRL TNLGDLQLGD YVNLERAAKF GDEIGGHLMS GHIITVAEIA KIFTSENNHQ 120
  121 IWFRIHDKQL MKYILHKGFI GIDGISLTIG DVVNNRFCVH LIPETLERTT LGKKRLGQRV 180
  181 NIEIDSQTQA IVDTVERVLA QKERERVASQ QPETLMEECA INEER

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.0
Match: 1i8dA
Description: Riboflavin synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
riboflavin synthase activity 5.11500941509376 bayes_pls_golite062009
catalytic activity 2.05427820269334 bayes_pls_golite062009
transferase activity 0.708491789248912 bayes_pls_golite062009
binding 0.534066059984103 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle