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View Structure Prediction Details

Protein: gi|37526651, gi|...
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 212 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|37526651, gi|....

Description E-value Query
Range
Subject
Range
gi|56460763, gi|... - gi|56460763|ref|YP_156044.1| phosphoribosylglycinamide formyltransferase [Idiomarina loihiensis L2TR...
241.0 [0..1] [212..1]

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Predicted Domain #1
Region A:
Residues: [1-212]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNIVVLISG SGSNLQAVID ACQQNRINGQ VCAVLSNTAN AYGLLRAKQA DIPTHVISPK  60
   61 NYADRQTYDE ALKHTIDQYQ PDLLVLAGYM RILTPDFVQH YLGRLLNIHP SLLPKYPGLH 120
  121 THRKAITNGD TEHGTSVHFV TEELDGGPVI LQAKVPIFAG DQENEVVKRV QTQEHNIYPL 180
  181 VINWFIEGRL SMVNGKAYLD GKILPPEGYA AE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.39794
Match: 1c2tA
Description: Glycinamide ribonucleotide transformylase, GART
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
methyltransferase activity 4.09881190860822 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 4.01667310557403 bayes_pls_golite062009
hydroxymethyl-, formyl- and related transferase activity 3.81159871979977 bayes_pls_golite062009
glycine hydroxymethyltransferase activity 3.49010887242285 bayes_pls_golite062009
phosphoribosylglycinamide formyltransferase activity 2.94311083909314 bayes_pls_golite062009
methionyl-tRNA formyltransferase activity 2.39150724300118 bayes_pls_golite062009
catalytic activity 2.16003793103722 bayes_pls_golite062009
binding 1.1813924954238 bayes_pls_golite062009
transferase activity 1.01502594768782 bayes_pls_golite062009
ligase activity 0.922788719307786 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle