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View Structure Prediction Details

Protein: CLPP_PHOLL
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 207 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLPP_PHOLL.

Description E-value Query
Range
Subject
Range
gi|77974303 - gi|77974303|ref|ZP_00829844.1| COG0740: Protease subunit of ATP-dependent Clp proteases [Yersinia fr...
gi|238710696, gi... - gi|238751006|ref|ZP_04612502.1| ATP-dependent Clp protease proteolytic subunit [Yersinia rohdei ATCC...
283.0 [0..1] [207..1]

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Predicted Domain #1
Region A:
Residues: [1-207]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYSDKRDQY APHMALVPMV VEQTTRGERS YDIYSRLLKE RIIFLTGQVE DHMANLVAAQ  60
   61 MLFLEAENPE KDIFLYINSP GGVITAGMSI YDTMQFIKPD VSTICMGQAC SMGAFLLTAG 120
  121 AKGKRICLPN SRVMIHQPLG GFQGQATDIE IHAQEILKVK SRMNELMAKH TGRPIEEIAK 180
  181 DTERDRFLSA DEAVEYGLVD KIFTHRD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.0
Match: 1tyfA
Description: Clp protease, ClpP subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.46154163027498 bayes_pls_golite062009
CoA carboxylase activity 0.939626895227199 bayes_pls_golite062009
acetyl-CoA carboxylase activity 0.764444938444292 bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds 0.621229080200493 bayes_pls_golite062009
enoyl-CoA hydratase activity 0.620657548610719 bayes_pls_golite062009
hydrolase activity 0.534319520590169 bayes_pls_golite062009
binding 0.367666848528835 bayes_pls_golite062009
ligase activity 0.32092496884003 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle