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View Structure Prediction Details

Protein: gi|36787795, gi|...
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 158 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36787795, gi|....

Description E-value Query
Range
Subject
Range
gi|46156715 - gi|46156715|ref|ZP_00132245.2| COG0782: Transcription elongation factor [Haemophilus somnus 2336]
218.0 [0..1] [157..11]

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Predicted Domain #1
Region A:
Residues: [1-158]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQIPMTVRG ADKLREELDY LKNVRRPKII SDIAEAREHG DLKENAEYHA AREQQGFCEG  60
   61 RIQEIEAKLS NAQVIDVTKM PKGGRVIFGT TVTVLNVNTD EEQTYRIVGD DEADIKENLI 120
  121 SVNSPIARGL IGKEVDDVVI IKTPGGEVEY EILKVEYI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.154902
Match: 1grjA
Description: GREA TRANSCRIPT CLEAVAGE FACTOR FROM ESCHERICHIA COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transcription elongation regulator activity 3.29955078032206 bayes_pls_golite062009
transcription regulator activity 1.60774059975688 bayes_pls_golite062009
binding 0.991817203637246 bayes_pls_golite062009
catalytic activity 0.885282592863018 bayes_pls_golite062009
peptidyl-prolyl cis-trans isomerase activity 0.749323709309751 bayes_pls_golite062009
cis-trans isomerase activity 0.682910915659374 bayes_pls_golite062009
isomerase activity 0.273471323955819 bayes_pls_golite062009
protein binding 0.0371998661994551 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle