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View Structure Prediction Details

Protein: RL9_PHOLL
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 150 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL9_PHOLL.

Description E-value Query
Range
Subject
Range
RL9_HAES1 - 50S ribosomal protein L9 OS=Haemophilus somnus (strain 129Pt) GN=rplI PE=3 SV=1
RL9_HISS2 - 50S ribosomal protein L9 OS=Histophilus somni (strain 2336) GN=rplI PE=3 SV=1
184.0 [0..1] [149..1]

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Predicted Domain #1
Region A:
Residues: [1-150]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIILLDKVA NLGSLGDQVN VKPGYARNYL VPQGKAVPAT KKNIEFFEAR RAELEANLAN  60
   61 VLATAEARAE KINALGSVTI ASKAGDEGKL FGSVGTRDIA DAVTAAGVEV SKSEVRLPNG 120
  121 VLRTIGEHEV NFQVHSDVFA KLNVNIVAEA 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.522879
Match: 1p85F
Description: 70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 8.6660890573497 bayes_pls_golite062009
structural molecule activity 8.10075613300028 bayes_pls_golite062009
catalytic activity 0.295853503406924 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle